Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq227148 531 5e-146 seq36366 134 1e-26 >seq227148 Length=2115 Score = 531 bits (588), Expect = 5e-146 Identities = 1189/1764 (67%), Gaps = 35/1764 (2%) Strand=Plus/Minus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 1809 ATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAGTACATTCCTGTTTTTAAACCCATTTTC 1750 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| ||| || ||||| | || |||| ||| | | || ||| | Sbjct 1749 CAAGCGTGGAAATGAATAGACGTTAGTTTCCCATAGTTAGGTTTAGCAACATGTATGTTA 1690 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||| ||||| ||||||||||| ||||| || || ||||| | || | || || Sbjct 1689 AAAGATTGGCTTTGGTCTATAAACGCTCCTCTATCAGCCGCCATCTGTA---TGGATGTT 1633 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT--- 37038 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 1632 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTGC 1574 Query 37039 -AAATGTTGAATAGAACCATTAT-GTAACACAATTGTATTCTTTATGTCATTATTCCACA 37096 | || ||| ||||| ||||| | |||| | || ||| || || || | || ||| | Sbjct 1573 AATATCTTGTATAGATCCATTGTTGTAA-ATTATAAGATTTTTCATATCTTCATCCCATA 1515 Query 37097 TATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATA 37156 || | | | || | | ||||| | || || || |||| |||||||||| Sbjct 1514 AATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTTCACTACAGGAAATTCTCCAGATA 1455 Query 37157 ATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAA 37214 | ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | |||| | Sbjct 1454 AGACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTACCAAG 1397 Query 37215 TATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATG 37274 ||||| | ||||| ||||| ||||| || ||||| | || ||| | ||| || || Sbjct 1396 AATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAACAGAGAATTGCGCAAACCGTG 1337 Query 37275 TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCA 37334 | | || | | ||| || || ||| ||||| | ||||| || | || ||| Sbjct 1336 TTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCA 1277 Query 37335 CATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCC 37394 ||||||||| ||||| ||||||| || |||||| | | |||||| || | || Sbjct 1276 CATATCATACTGTAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGTGCC 1217 Query 37395 GTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAAT 37454 | ||| |||| ||| ||||||| ||||| ||| ||||||| |||||||| || || Sbjct 1216 TTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATAT 1157 Query 37455 TTGTATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCAATAATATAAACA 37513 |||| ||| | | |||||| ||| || ||| || | || | || || | |||| Sbjct 1156 TTGTTGATTGAGATGTATTGCTTTTTCACTTTCGTAAGGTAT-TCTCATCAACACAAACG 1098 Query 37514 CATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACG 37573 |||| |||| ||||||||||| ||||| || ||||| ||| || |||| || | | Sbjct 1097 CATCTGCCATGCCCTGAACACCAATACCAATAGGTCTGTGTCTCATATTTGAAGTTTTTG 1038 Query 37574 ATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTT 37633 ||| || |||||| | || | ||| || | ||| |||| ||||| | || || | Sbjct 1037 CTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTTACAATCT 978 Query 37634 TCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACG 37693 | || ||| | | ||||| | || ||||| ||||| | |||||| | | | | Sbjct 977 TTGTGATTTCTTTTAACTTTTTAAAATTAAATCTCTTATTTTCAACAAACATGTTAAGTG 918 Query 37694 AAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTG 37753 || || | || ||||| || || ||||| ||||| | | |||| | || ||| | Sbjct 917 CTATGGAAGCAAGGTTACAAACTGCCACTTCTTCTTCTGAAGTGTATTGCACAACCTCAG 858 Query 37754 TACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAG 37813 | || ||||| || || ||||||| || | ||| ||||||| || | ||||||| Sbjct 857 TGCAAAGATTGCTACATTTAATTGTGCCAAGATTTTTTTGATTACTCTTCCTGTTACAAG 798 Query 37814 AATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCC 37873 ||| ||||||| || || || || || |||| ||| || || ||||| || |||| Sbjct 797 CATCCTTATATAACATGTATGGTGTACCAGTCTCTACTTGGGCTTCTATAATTGACTTCC 738 Query 37874 ATAAACTTCTT--GCTTTAACGATCGCTTT---AAt-ttttttCTTTGTTTCGTATTCTA 37927 |||| |||| ||| || | | ||| ||| | |||||| ||| |||| Sbjct 737 ATAA--CTCTTGAGCTCGGAC--TTGTTTTATAAATCGTGTTTCTT--CTTCATATTTGG 684 Query 37928 TATATAATTTGTTAAAATCATTCCCCCAT-ACA-TCGCATAATCCTGGACATTCGCATGG 37985 |||||| || | || || | | |||| ||| || | || ||||| || || Sbjct 683 TATATAGTTCTTCGAATTCCT--CTCCATAACAGTCAGCGAGGCCGGGACAATCATGAGG 626 Query 37986 ACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCA 38045 |||||| ||| ||| | ||||| |||||||| | || |||||| | |||||| | ||| Sbjct 625 ACACATGAGACTCCAAACGTCATCATTTTCTACTCTTTTCATAAACAGATCAGGAATCCA 566 Query 38046 TAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT 38105 ||| ||| ||| | ||| | | ||| |||||| || ||| |||||| |||| Sbjct 565 TAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTATTCTTCTTTAAATC 506 Query 38106 TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || || || ||||| || || ||||| || |||| |||||| | | ||| || || | Sbjct 505 TAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAATAAATTGCAAATGCACCAGGGCG 446 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 ||| | || || |||| | |||||| | || || ||||| | ||| ||||| || || Sbjct 445 TTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCAC 386 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 || |||||| || ||| || | || | ||| |||| ||||| ||||| || | Sbjct 385 TAGACCATTCGAGACGCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATG 326 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATC 38345 | | || ||||| ||||| ||| ||| || ||||| || || |||||||| ||||| Sbjct 325 TGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACACTGTTTTAAAGTATC 266 Query 38346 AAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGG 38405 ||| |||||||| || || || || || || | || | || ||| || | || || Sbjct 265 AAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAAGAGGAAAGCTGTGG 206 Query 38406 CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAA 38465 | ||| || | || || | |||||| ||| ||| | || |||| ||||||| Sbjct 205 CCGTGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCGTGTGTAAAATATTTCTCCGACAT 146 Query 38466 ATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCT 38525 |||||| || | ||| || ||| || || | ||||||||||||| || || || Sbjct 145 CATATTATAAGTATTGATTGCACTATCAATGTCTTCACCGTGAATACCTATTGAGACTCT 86 Query 38526 CATTAGCATATGTTGTGGTCTTTC 38549 ||| ||||| ||||| |||||||| Sbjct 85 CATAAGCATGTGTTGAGGTCTTTC 62 >seq36366 Length=4232 Score = 134 bits (148), Expect = 1e-26 Identities = 164/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 3234 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 3293 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || | || | | Sbjct 3294 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAGAAACGCT 3352 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | |||| |||||||| |||||||||||| || ||||| ||||||| | ||| || | Sbjct 3353 CTACTAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACATGCTTGA 3412 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATC 12105 |||| | |||||| |||| ||||| | |||||||| Sbjct 3413 TAAAATGTTTTTCACAATCTT---TTAATGTCTCCCAATC 3449 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||| || | || |||| | || ||| || |||||||| || || |||||||| Sbjct 2340 AAAATTACTAAATATACCT-CATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGG 2398 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| || |||||||| | ||||||||| | |||||| || || || |||||||| Sbjct 2399 CATCAGACCACGTTTTTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCC 2458 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTAGATATCCA 11811 || || || ||||| || | | | ||||||| || | | ||||| ||||| Sbjct 2459 TTCAACTGCCGCAAAAGCAATAATACGTTCTCCAAATGTAGCAGTCTTGCTGCCGATCCA 2518 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | | ||||| || || ||||| ||||| || | || || || || |||||||| Sbjct 2519 CTGTAATGCCCAGTCTGCCTTCTTCTTTACACACGGTAGAGTCTCAATTGCATTAAATAA 2578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464822423325440