Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq227148 529 2e-145 seq36366 123 3e-23 seq242670 105 9e-18 seq352311 95.1 2e-14 seq187312 91.5 2e-13 >seq227148 Length=2115 Score = 529 bits (586), Expect = 2e-145 Identities = 1097/1619 (68%), Gaps = 39/1619 (2%) Strand=Plus/Minus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 |||||| | || || | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 64881 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 64940 |||||||| ||||||| ||| | |||| ||| ||||| ||| ||||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 || | || | || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 65059 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 65060 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCT 65116 |||| | |||| |||| |||| ||| || || |||||| | || || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 65176 ||| || || || |||| |||||| | | || ||| | | || || || | || Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 65177 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 65237 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296 | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 65297 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 65356 | | ||| | | ||||| | ||| || || ||||| || | |||| | |||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 65357 ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATC 65415 || | || ||||| ||||| | || || | || | Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATCATACTGTAGGATACCTTGGCTTGCTGGACTC-C 1239 Query 65416 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 65475 || |||||| ||||| ||||| || || |||| ||||||||| || |||||||||| Sbjct 1238 CTTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 1179 Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 | |||||||| ||||| || || | | ||| |||| | ||||| || || | | Sbjct 1178 CATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCACTTTCGTAAG 1119 Query 65536 GATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 | || | | | | | |||||| ||||| | || |||||||||||||| |||||||| Sbjct 1118 G-TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTG 1060 Query 65595 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 65654 |||||| |||| || ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1059 TGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTG 1000 Query 65655 TTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 65711 || | |||| | ||||| ||||| | || || | || ||||| ||||| | Sbjct 999 TTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAACTTTTTAAAATTAAATCTC 943 Query 65712 TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 | || | ||||||||||| | ||| | || || || |||||||| || || || | Sbjct 942 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCACTTCTT-- 885 Query 65772 GCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | || | | ||||| | | ||||||||||||||| ||||| || || || || | | Sbjct 884 -CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGTGCCAAGA 826 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 |||| |||||||||||| ||||||| ||||||||||| | ||| |||| |||||||| Sbjct 825 TTTTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGTACCAGTC 766 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAGAT 65942 || | || | ||||||||| | ||||| | || |||| ||| | ||||| || Sbjct 765 TCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTTTATAAAT 706 Query 65943 TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 66002 || | |||| | || ||| ||||| | | |||||| || ||||| || Sbjct 705 C-GTGTTTCTTCT-----TCATATTTGGTATATAGTTCTTCGAATTCCTCTCCATAACAG 652 Query 66003 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 66062 | | | || ||||| |||| |||||||| | ||| | | |||| | ||| Sbjct 651 TCAGCGAGGCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCATTTTCTACT 592 Query 66063 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCC 66122 | ||||||||| |||||||||||||| | ||| ||| | ||||| | ||| ||| Sbjct 591 CTTTTCATAAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCT 532 Query 66123 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCC 66182 || || ||||||||||| || | ||| | |||| | | || || |||||| || || Sbjct 531 TCCTTACCTGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCT 472 Query 66183 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 66242 || || || || | | ||||| ||||||||||| || ||||||| ||||| || || Sbjct 471 AAATAAATTGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATCTGGCAGTA 412 Query 66243 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 66302 || ||||| |||||||||||||| | | |||||| || ||||| || || | || Sbjct 411 TTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGCCAGCTATG 352 Query 66303 TAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 66359 || || || | || || || || || |||||| || || || |||| Sbjct 351 TAAGAACCCTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATTTA 295 Query 66360 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 66418 || |||||||| || ||||||| |||||| | || || || || ||||| || |||| Sbjct 294 GAAATTAATGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 236 >seq36366 Length=4232 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || ||| ||| | ||| ||| || || | ||||||||| || ||||| |||| Sbjct 2356 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCACGTTTTT 2415 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||||||||| || ||||| || || || || |||||||| ||||||||||| | Sbjct 2416 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCTTCAACTGCCGCAAAAG 2475 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 36354 |||||| | |||||| | ||| ||| || ||||||| | ||||| || Sbjct 2476 CAATAATACGTTCTCCAAATGTAGCA--GTCTTGCTGCCGATCCACTGTAATGCCCAGTC 2533 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||||||| |||||||| || | ||||| || |||||||| Sbjct 2534 TGCCTTCTTCTTTACACACGGTAGAGTCTCAATTGCATTAAA 2575 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| || ||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||||| ||||||| ||||| || ||||| || Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAA 3701 >seq242670 Length=698 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 390 CTTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 449 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| ||| | |||| | ||| ||||||| ||| Sbjct 450 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq352311 Length=307 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || |||||||||| ||| |||| || ||||| || || | |||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 66930 GTTACTCCATTATATATTCC 66949 ||||| ||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 >seq187312 Length=1851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 158443 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 158500 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 158501 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 158560 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 158561 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 158620 |||||||| || ||||| | ||| | | | | ||||||||| | |||| Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 158621 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 158680 ||||| | || | ||||| || |||| ||||||||| |||| | | | Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 158681 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAG 158737 |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 158738 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 158797 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 158798 CTGTTTGTA 158806 || ||||| Sbjct 1395 TTGCTTGTA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652971786899840