Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq227148 565 4e-156 seq36366 104 3e-17 seq242670 102 1e-16 seq352311 100 4e-16 seq187312 95.1 2e-14 >seq227148 Length=2115 Score = 565 bits (626), Expect = 4e-156 Identities = 1109/1619 (68%), Gaps = 39/1619 (2%) Strand=Plus/Minus Query 78700 ATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 78759 || ||| | || || | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 78760 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAA 78819 |||||||| ||||||| ||| | |||| ||| |||||| ||| ||||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879 || | || | || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 78938 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 78939 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCT 78995 |||| | |||| |||| |||| ||| || || |||||| | || || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 ||| || || ||||||| |||||| | | || ||| | | || || || | || Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | |||||| | || || | |||||| ||||| || || || |||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 79176 TAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235 | | ||| | | ||||| | || || || ||||| || | |||| |||||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 || | || | ||| | |||||| ||||| ||||| | || || | ||| Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATCATACTGTAGGATACCTTGGCTTGC-TGGACTCC 1239 Query 79296 TGTG-TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 || ||||| || | ||||| ||||| |||||||||||||| || |||||||| | Sbjct 1238 CTTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 1179 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 | |||||||| ||||| || || | | |||||||| | ||||| | || || | | Sbjct 1178 CATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCACTTTCGTAAG 1119 Query 79415 GATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 | || | | | | | |||||| ||||| | || |||||||||||||| |||||||| Sbjct 1118 G-TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTG 1060 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 |||||| |||| ||| ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1059 TGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTG 1000 Query 79534 TTGAGATTCCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC 79591 || | ||| ||| | | ||||| | || |||| || ||||| ||||| Sbjct 999 TTTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAACTTTTTAAAATTAAATCTCT 942 Query 79592 CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 || | ||||||||||| | || | || || || |||||||| || || || | Sbjct 941 TATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCACTTCTT--- 885 Query 79652 CATCCGCA---TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | || | | ||||| | | |||||||| || || ||||| ||||| || || | || Sbjct 884 CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGTGCCAAGAT 825 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 ||| |||||||||||| ||||||| ||||||||||| | ||| | || |||||||| | Sbjct 824 TTTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGTACCAGTCT 765 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAGACT 79822 | | || | ||||||||| | ||||| | || |||| ||| | ||||| | Sbjct 764 CTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTTTATAAA-- 707 Query 79823 TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACAT 79882 || ||||| ||| |||| ||||||| | |||||| || ||||| || | Sbjct 706 ----TCGTGTTTCTTCTTCATATTTGGTATATAGTTCTTCGAATTCCTCTCCATAACAGT 651 Query 79883 CGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTC 79942 | | | || ||||| || | ||||||||| | ||| | |||||| | ||||| Sbjct 650 CAGCGAGGCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCATTTTCTACTC 591 Query 79943 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 80002 ||||||||| |||||||||||||| | ||| ||| || ||||| | ||| || | Sbjct 590 TTTTCATAAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTT 531 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | || ||||||||||| || | ||| | |||| | | || || | |||||| || || | Sbjct 530 CCTTACCTGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTA 471 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 | || || || | | || || ||||||||||| || ||||||| ||||| || || | Sbjct 470 AATAAATTGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATCTGGCAGTAT 411 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 | ||||| |||||||||||||| | | |||||| || ||||| || || | || | Sbjct 410 TGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGCCAGCTATGT 351 Query 80183 AGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 | || ||| || | || || || || || |||||| || || || |||| Sbjct 350 AAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATTTA 295 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 || |||||||| || ||||||| |||||| | || || || |||||||| || |||| Sbjct 294 GAAATTAATGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 236 >seq36366 Length=4232 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| |||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| |||||||||||||||| ||||| || | ||||||| Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAAACGTCTTGGATT 3713 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || ||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 3265 TACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCA 3324 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || | || || ||| | || || || |||| || ||||| || || || ||| Sbjct 3325 GTCACTTGAACCTCTTGTGAGAAACGCTCTACTAAGTTCTCATTAACAATACCATCAGAA 3384 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 || ||||| || || || ||||| || |||||||||||||| Sbjct 3385 GCCGCAAAGAATGCTAAGACATGCTTGATAAAATGTTTTTC 3425 >seq242670 Length=698 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 ||| || | ||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 390 CTTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 449 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 | ||| |||| || |||| ||| | |||| | ||| ||||||| ||| Sbjct 450 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq352311 Length=307 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || ||||||| ||| |||| || |||||||| || |||||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 80809 GTTACTCCATTATATATTCC 80828 ||||| ||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 >seq187312 Length=1851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 173691 TTATGACTCCA--ATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTT 173748 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 173749 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 173808 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 173809 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 173868 |||||||| || ||||| | ||| | | | | ||||||||| | |||| Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 173869 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCAT 173928 ||||| | || | ||||| || |||| ||||||||| |||| | | || Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 173929 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 173985 |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 173986 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 174045 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 174046 CTGTTTGTA 174054 || ||||| Sbjct 1395 TTGCTTGTA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712592896288640