Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq26980 107 1e-18 seq78339 98.7 8e-16 seq26979 98.7 8e-16 seq422991 82.4 6e-11 >seq26980 Length=2195 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| |||||||| | ||| || ||||| | ||| ||| | || || Sbjct 2078 ACTAAATGTAAAGTAGATTCCTTTTGTATATTATAGTCGGAGAGTGTGCGTCCATCTTCA 2019 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || |||||||| | | |||||||| | || | |||||||| || ||| Sbjct 2018 AGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGATCTGGAGGAATGCCTTCTTTATC-CTG 1960 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 | || | ||||| | ||| |||||| ||| || || |||| || |||||||| Sbjct 1959 AATCTTGGCCTTGACATTTTCAATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGTTTT 1900 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || |||||||||||||||||| Sbjct 1899 GCCAGTAAGTGTCTTCACAAAAATTTGCATT 1869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || || || || | |||||| || |||| ||| ||| | || || Sbjct 1850 ACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCA 1791 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| || || |||||||| | || || ||||| | || | ||| || || || ||| Sbjct 1790 AGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCCTTATC-CTG 1732 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 | || | |||| || | ||| ||| || || ||| || || | || |||||||| Sbjct 1731 AATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAGTGTGATAGTTTT 1672 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || ||||| || || ||||||||||||||| Sbjct 1671 GCCAGTTAGTGTCTTTACAAAAATTTGCATT 1641 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||||| || ||||| || | ||| |||||| || | |||||| || || Sbjct 1412 CCACCTCTCAGTCGTAGTACCAAGTGTAAAGTAGACTCCTTCTGAATATTGTAGTCAGAT 1353 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | || || || |||||||| | || || ||||| | || Sbjct 1352 AGTGTGCGTCCATCTTCAAGCTGCTTTCCTGCAAAAATAAGTCTTTGCTGATCTGGGGGA 1293 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | | |||| || | ||| ||| || || ||| || Sbjct 1292 ATTCCCTCTTTATC-CTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAAC 1234 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||| || || || || || ||||| |||||||||||| Sbjct 1233 TTCTAGAGTGATAGTCTTGCCAGTCAGTGTCTTCACGAAAATTTGCATT 1185 >seq78339 Length=2434 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | |||||||| | || || ||||| | |||||| || ||| Sbjct 1963 CCTCCTCTCAGACGCAGTACCAAATGAAGTGTCGATTCTTTTTGAATATTGTAGTCAGAC 1904 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||||||| ||||| || ||||| | || |||||||| | || Sbjct 1903 AGGGTGCGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1844 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | ||| |||||| || || || Sbjct 1843 ATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1784 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| ||||||||||| || || ||||| ||||| |||||||| Sbjct 1783 TCTAACGTAATAGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 1737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| || ||||| | ||||| ||||| Sbjct 1507 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1448 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||||||| || || ||||||||||| || |||||||| | || Sbjct 1447 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 1388 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || | |||| || | | | |||||| || || || Sbjct 1387 ATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACT 1328 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || |||||||| ||||| |||||||| Sbjct 1327 TCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTT 1278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || || || ||||| | || |||||||| ||||||||||| Sbjct 2156 CTCCTTTTGGATGTTGTAGTCTGATAAAGTACGCCCATCTTCCAATTGCTTGCCGGCAAA 2097 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || |||||||| | || | || ||||| || ||| | || || | Sbjct 2096 GATAAGACGTTGTTGATCTGGGGGAATGCCCTCTTTATCTTGAATCTTAGCCTTTACATT 2037 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| || || | |||||||| || || ||||| || || || Sbjct 2036 TTCAATGGTGTCAGATGGCTCCACCTCCAGGGTTATAGTCTTGCCTGTTAGGGTCTTAAC 1977 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 1976 AAATATTTGCAT 1965 >seq26979 Length=899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||| || || | ||| |||||||| | ||| ||||| |||| ||| ||| | || Sbjct 290 AACACTAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCTGACAGTGTGCGTCCATCT 231 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| ||| || || || ||||||| || |||||||| | || | ||||| || || Sbjct 230 TCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 171 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| | || || | ||| ||| || ||| || || |||| || || ||| Sbjct 170 TGAATCTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCTAAAGTAATCGTT 111 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || ||||| |||||||||||||| Sbjct 110 TTTCCAGTCAGTGTTTTTACAAAAATTTGCAT 79 >seq422991 Length=614 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||| | ||| | ||| |||||||| | ||||| || ||| Sbjct 17 CCTCCGCGAAGCCGAAGCACAAGATGTAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 76 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| | || || | ||||| || ||||| |||||||| || || || | || Sbjct 77 AATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 136 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | | | || || || || || Sbjct 137 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCTATAGTATCAGAGGCTTCCACC 196 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || || || |||||||||||| Sbjct 197 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378431282618208