Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq227148 544 1e-149 seq36366 123 3e-23 seq242670 96.9 5e-15 seq352311 95.1 2e-14 seq187312 87.8 2e-12 >seq227148 Length=2115 Score = 544 bits (602), Expect = 1e-149 Identities = 1092/1611 (68%), Gaps = 23/1611 (1%) Strand=Plus/Minus Query 70783 ATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAG 70842 ||||| | || || | ||||||||||| | | | ||| | ||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 70843 TACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 70902 ||||| |||||||||| ||| | |||| ||| ||||| ||| ||||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 70903 TAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTG 70962 ||| |||| | || | || || || | || || ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 70963 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 71021 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 71022 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCT 71078 |||| | |||| |||| |||| ||| || || |||||| | ||| || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 71079 ATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 |||||| || ||||||| |||||| | | || ||| | | || || ||| | || Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | || ||| | || || | |||||| ||||| || |||||||||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 ||| ||| | | ||| ||| || || || ||||| || | |||| | |||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 71319 ATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCC 71378 || | || || || | || || || Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATCATACTGTAGGATACCTTGGCTTGCTGGACTCCC 1238 Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438 | |||||| ||||| ||||||||||| |||| ||||||||| || |||||||| || Sbjct 1237 TTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACC 1178 Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498 ||||||||| ||||| || || | | |||||||| | ||||| || || | || Sbjct 1177 ATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCACTTTCGTAAGG 1118 Query 71499 ATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 || | | | | | |||||| ||||| | || ||||| |||||||| |||||||||| Sbjct 1117 -TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTGT 1059 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 ||||| |||| ||| ||| ||||| || | ||||||| | |||| ||| || | ||| | Sbjct 1058 GTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGT 999 Query 71618 TGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 | | |||| ||| | | ||||| | || |||| || ||||| ||||||| Sbjct 998 TTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAACTTTTTAAAATTAAATCTCTT 941 Query 71676 ATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || | ||||||| ||| | || | || || || |||||||| || || || | | Sbjct 940 ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCACTTCTT---C 884 Query 71736 ATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 71792 || | | ||||| | || |||||||||||||| ||||| || || || || | ||| Sbjct 883 TTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGTGCCAAGATT 824 Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || |||||||||||| ||||||| ||||||||||| | || | || |||||||| || Sbjct 823 TTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGTACCAGTCTC 764 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT 71912 | || | ||||||||| | ||||| | || |||| | | || | ||| Sbjct 763 TACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTTTATAAATCG 704 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 ||||| ||| |||| ||||||| | |||||| || ||||| || | | | Sbjct 703 TGTTTCTTCTTCATATTTGGTATATAGTTCTTCGAATTCCTCTCCATAACAGTCAGCGAG 644 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 || ||||| |||| |||||||| | ||| | |||||| | ||||| |||||| Sbjct 643 GCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCATTTTCTACTCTTTTCAT 584 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||| |||||||||||||| | ||| ||| || ||||| | ||| || || || || Sbjct 583 AAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACC 524 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||||||| || | ||| | |||| | | || || | |||||| || || || || || Sbjct 523 TGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAATAAAT 464 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | || || ||||||||||| || ||||||| ||||| || || || ||||| Sbjct 463 TGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATA 404 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 |||||||||||||| | | |||||| || | ||||| || || | || || || Sbjct 403 CACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGCCAGCTATGTAAGAACC 344 Query 72273 ACTG-GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| || | || | || || || |||||| || || || |||||| ||||| Sbjct 343 -CTGAGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGATTTAGAAATTAA 287 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||| || ||||||| |||||| | || || || || ||||| || |||| Sbjct 286 TGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 236 >seq36366 Length=4232 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||| ||| | ||| ||| || || | ||||||||| || ||||| |||| Sbjct 2356 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCACGTTTTT 2415 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||||||||| || ||||| || || || || |||||||| ||||||||||| | Sbjct 2416 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCTTCAACTGCCGCAAAAG 2475 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 |||||| | |||||| | ||| ||| || ||||||| | ||||| || Sbjct 2476 CAATAATACGTTCTCCAAATGTAGCA--GTCTTGCTGCCGATCCACTGTAATGCCCAGTC 2533 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||||| |||||||| || | || || || |||||||| Sbjct 2534 TGCCTTCTTCTTTACACACGGTAGAGTCTCAATTGCATTAAA 2575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| ||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || || || ||||||| |||||||| ||||| || | ||||||| Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAAACGTCTTGGATT 3713 >seq242670 Length=698 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || | ||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 390 CTTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 449 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||||| ||| Sbjct 450 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq352311 Length=307 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || ||||||| ||| |||| || |||||||| || | |||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 >seq187312 Length=1851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 241/367 (66%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 165040 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTT 165097 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 165098 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 165157 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 165158 TCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 165217 |||||||| || ||||| | ||| | | | | ||||||||| | |||| Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 165218 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 165277 ||||| | || | ||||| || |||| ||||||||| |||| | | | Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 165278 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 165334 |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 165335 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 165394 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 165395 CTGTTTG 165401 || ||| Sbjct 1395 TTGCTTG 1401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665835723813760