Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27]
632,176 sequences; 365,010,054 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq19446 192 5e-44
seq14063 149 5e-31
seq26980 105 6e-18
seq26979 96.9 3e-15
seq78339 91.5 1e-13
>seq19446
Length=4212
Score = 192 bits (212), Expect = 5e-44
Identities = 774/1198 (65%), Gaps = 47/1198 (4%)
Strand=Plus/Minus
Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171
||||| ||||| | | || ||||| || ||||||||||||||||| || | |||||
Sbjct 2829 TTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCGCCT 2770
Query 100172 AATCCGTTTTGATCTACATAACTATTTTTTGCTAATACAGAATCGA-CACTGTCAAAAGA 100230
| ||| | |||||| || ||| | | || || || | || ||||| |||
Sbjct 2769 AGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGA-TCTAGCATTGTCATAAGT 2711
Query 100231 GATTAAATCGCCCTTGTCTTTGT-TAAAAACGTAAGCCGCTTTAGCGAC-----CG-AAT 100283
| | ||| || | | | || | || ||||||| |||| ||||| || |||
Sbjct 2710 TACAAGATCTCCAGT-TGATGGTCTGAAGACGTAAGGTGCTTGGGCGACATTGTCGTAAT 2652
Query 100284 CAAATTTGTAAATGTACTTGTTCAATT-CGTTTTCAATTTGGCGATAATCGACAACGCCG 100342
|| | | || |||| ||||| | || |||| | | || || || || |||
Sbjct 2651 GGAACTCCCACTTGC-CTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCCG 2593
Query 100343 TCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACCG 100399
|||| |||||| || | || || || | ||| |||||||||| | |||||| ||
Sbjct 2592 TCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTCG 2533
Query 100400 TCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTG 100459
| || | ||||| ||||| || || || ||||| ||||| || || | ||| ||
Sbjct 2532 TAAT---CATGGACGCCAGTCCAGCCACGACCATACATAGCAACACCGACTACAATCTTC 2476
Query 100460 CGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCG 100519
|| | ||| ||||| | | |||| || || || | |||| ||
Sbjct 2475 TTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAGGTTTCC 2416
Query 100520 TTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGA 100575
|| || ||||| |||||||| | | ||||| | | |||| |||| |||||
Sbjct 2415 TTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCG---TTTGA 2360
Query 100576 CCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAA 100634
|||||| || || || || || ||||| |||||| || | ||| | | ||||| ||
Sbjct 2359 CCAGGCTCCCTTGAAGTCATAACTCATCAAGAAA-ATATGATCCATATAATTTTGAGCCT 2301
Query 100635 CGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGT 100694
| |||| | || || ||||| || | || | || || || || || ||||
Sbjct 2300 TGCCGTAGTCAACGACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGT 2241
Query 100695 ACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAA 100753
| | || || | | || || || | || |||||| | || ||||| |||| |||
Sbjct 2240 ATTTCTTACCATTCTT-AGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAA 2182
Query 100754 ATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTTGCCG 100813
| || || | || || | | || ||| ||||| || ||||||||
Sbjct 2181 CTTACATAGCAATCACCATCT---TCTGGGCTACCGAGATCAGGGTTAGCACCTTTGCCA 2125
Query 100814 CCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCC 100873
|| || |||||||| || || || || || || || || ||||| | | || |||
Sbjct 2124 CCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGGAACTCC 2065
Query 100874 TTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGG 100930
|| || || | |||||| || | | | | | || | ||| |||| ||
Sbjct 2064 TTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACAAAAAAGAAGAAAGGA 2008
Query 100931 TCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTG 100990
|| | | |||||| || || || || || ||||| || | | || || ||||||
Sbjct 2007 TCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTTAATTCAGG----GCGAGCTTG 1952
Query 100991 GCC----GCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCC 101046
| ||||| || || || ||||| ||||| ||||||||||||| |||| ||
Sbjct 1951 TTTTAATGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCC 1892
Query 101047 CTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACG 101106
||||| |||||||||| ||| ||||| |||||||| || | ||||||||| || |||
Sbjct 1891 TTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACG 1832
Query 101107 ACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTT 101166
|| ||||||| |||||||| |||| ||||||||| ||| ||| | | ||| ||
Sbjct 1831 GCCGCTGCAGGACCGCTGCAGTGCTTGAAAACTGCCTTCAATCTCTTTTAAGCTGTCATT 1772
Query 101167 GAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAG 101226
|| |||||| ||||||||||| || || || ||||| | || ||| | ||||| || |
Sbjct 1771 GATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTAT 1712
Query 101227 CGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCA 101284
|| | || || || || || | || |||||||| ||||| || || |||
Sbjct 1711 AGGTATGCGATCCACGGGGAATTTCCTAGGATAGACGCCCCATTCTACGAAGTAGGCA 1654
>seq14063
Length=7913
Score = 149 bits (164), Expect = 5e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914
|| |||| || || | ||||| || || || || || |||||||| ||| | |||||
Sbjct 7186 GCGCACGCCTCCGTGATCACCTTCTGGACGTACTCTCGACCCTTGACCAGTTGCACGTAA 7127
Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTG 24974
||||| || ||||||| ||||||| || | ||||||| |||| || | ||||||||
Sbjct 7126 GCGCACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCATTCTCCCAGTCC 7067
Query 24975 TCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAG 25034
| | |||||||| ||||| || || || |||||| | ||||||||||||||||
Sbjct 7066 TTGAGGCCGCCGTCACAGTAGAAGCACTTTGTTTTGTCACCCTGGCCGGTGTAAAAGAAT 7007
Query 25035 CCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTG 25094
|| ||||| || |||| ||||| || |||| || ||||||||| || | || | |
Sbjct 7006 CCCGCTTCGGCGAGTTCCTCGGGTTTCTGTTTCATACTGCGTGGCCAGTCGCTGAAGGAG 6947
Query 25095 CGCAAACGCGCAGCTTC 25111
|||| || || || ||
Sbjct 6946 CGCAGGCGGGCCGCCTC 6930
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289
|||| || ||||| || |||||||| || ||||| || || ||||| ||||
Sbjct 6787 CGCAGGAAGGGGCACTGGGGCGCCCACCGCTGGTGATCCTTCGCGGGATCGTCACCCGGA 6728
Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349
|||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| |
Sbjct 6727 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 6668
Query 25350 TAGTAGAACCCATT 25363
|| ||||| |||||
Sbjct 6667 TAATAGAAGCCATT 6654
>seq26980
Length=2195
Score = 105 bits (116), Expect = 6e-18
Identities = 164/234 (70%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || | || |||| ||| || ||||||||||| ||||||||||| || |
Sbjct 1414 TTCCACCTCTCAGTCGTAGTACCAAGTGTAAAGTAGACTCCTTCTGAATATTGTAGTCAG 1355
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 1354 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCTGCAAAAATAAGTCTTTGCTGATCT 1299
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || ||||||| ||| || | | | ||||| ||||
Sbjct 1298 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 1239
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| ||| | || || || || || || | || || || ||||||||||||
Sbjct 1238 TCAACTTCTAGAGTGATAGTCTTGCCAGTCAGTGTCTTCACGAAAATTTGCATT 1185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889
|||| || || ||||| || || ||||||||||| || | || ||| ||||||
Sbjct 1850 ACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTGACAGTGT----GCGTCCATC 1795
Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
|| || || || || ||| |||||||||| |||||||| ||| | ||||| || ||
Sbjct 1794 TTCAAGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCCTTATC 1735
Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008
||| ||| ||| || | | | ||||| |||||| ||| | || || ||
Sbjct 1734 CTGAATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAGTGTGATAGT 1675
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| || |||| || || |||||||||||||||
Sbjct 1674 TTTGCCAGTTAGTGTCTTTACAAAAATTTGCATT 1641
Score = 87.8 bits (96), Expect = 1e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | |||||| ||||| ||||| || ||||| || |||| | ||| | || ||
Sbjct 1167 CACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCCGATAGTGTCCGCCCATCTTC 1108
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| || || || || |||| |||||||| ||||| || | ||| || |||||
Sbjct 1107 CAGTTGCTTTCCGGCGAAAATTAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 1048
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||| || || || | ||| ||||| || || ||| | || ||||||||
Sbjct 1047 AATCTTTGCCTTCACGTTCTCGATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTT 988
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAA 19057
|| ||||| ||||| || ||||||||||| | ||||| | ||||
Sbjct 987 CCCAGTTAAGGTTTTTACGAAAATTTGCATGATGAATCTGTAATAA 942
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | |||||| || || ||||| |||||||| ||||| | || ||| | || ||
Sbjct 1623 CACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTGACAGTGTACGTCCATCTTC 1564
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||||||| || ||| |||| || ||||| || || || | || ||||||||
Sbjct 1563 CAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTGTCTTG 1504
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| || || | | | ||||| || || ||| | || ||||||||
Sbjct 1503 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTT 1444
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || || || || |||||||||||||||
Sbjct 1443 GCCAGTCAATGTCTTTACAAAAATTTGCATT 1413
>seq26979
Length=899
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889
|||| |||||| ||||| || |||||||||||||| || | || || ||||||
Sbjct 743 ACCAAGTGCAAGGTAGATTCTTTTTGAATATTGTAGTCTGACAAAGT----GCGTCCATC 688
Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
|| || ||||| || ||| ||||||| ||||| || || ||| | ||||| || ||
Sbjct 687 TTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATC 628
Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008
|||||| ||| || | | | || || |||||| ||| | |||||| ||
Sbjct 627 TTGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGGGTAATAGT 568
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || || | ||||| |||||||||||||||
Sbjct 567 CTTGCCAGTAAGTGTTTTAACAAAAATTTGCATT 534
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/216 (69%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
||||| | |||||| ||||| |||||||| ||||| ||||| | || ||| ||||||
Sbjct 290 AACACTAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCTGACAGTGT----GCGTCC 235
Query 18890 ----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTT 18945
||||| || || || || |||| ||||| || ||||| || | ||| || ||
Sbjct 234 ATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTT 175
Query 18946 GTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAAT 19005
||| ||| || || || | | | ||||| || ||| ||| | |||||
Sbjct 174 GTCTTGAATCTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCTAAAGTAAT 115
Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || | ||||| ||||||||||||||
Sbjct 114 CGTTTTTCCAGTCAGTGTTTTTACAAAAATTTGCAT 79
>seq78339
Length=2434
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/230 (69%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| |||| ||| | ||||| || |||||||| ||||| || | | || | ||||
Sbjct 1492 AATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCT 1433
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|||| || || || ||| |||| | | || ||||| || | ||| || |||||
Sbjct 1432 TCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 1373
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
||||||| |||||| | ||| ||| ||| ||| || ||| | |||||||||
Sbjct 1372 TGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTT 1313
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT-AAATCTCTTATAAA 19058
||||| || | ||||| || ||||| |||||||| | |||| | | |||
Sbjct 1312 TTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTGATATCTGTAACAAA 1263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411378663749344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |