Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq19446 192 5e-44 seq14063 149 5e-31 seq26980 105 6e-18 seq26979 96.9 3e-15 seq78339 91.5 1e-13 >seq19446 Length=4212 Score = 192 bits (212), Expect = 5e-44 Identities = 774/1198 (65%), Gaps = 47/1198 (4%) Strand=Plus/Minus Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171 ||||| ||||| | | || ||||| || ||||||||||||||||| || | ||||| Sbjct 2829 TTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCGCCT 2770 Query 100172 AATCCGTTTTGATCTACATAACTATTTTTTGCTAATACAGAATCGA-CACTGTCAAAAGA 100230 | ||| | |||||| || ||| | | || || || | || ||||| ||| Sbjct 2769 AGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGA-TCTAGCATTGTCATAAGT 2711 Query 100231 GATTAAATCGCCCTTGTCTTTGT-TAAAAACGTAAGCCGCTTTAGCGAC-----CG-AAT 100283 | | ||| || | | | || | || ||||||| |||| ||||| || ||| Sbjct 2710 TACAAGATCTCCAGT-TGATGGTCTGAAGACGTAAGGTGCTTGGGCGACATTGTCGTAAT 2652 Query 100284 CAAATTTGTAAATGTACTTGTTCAATT-CGTTTTCAATTTGGCGATAATCGACAACGCCG 100342 || | | || |||| ||||| | || |||| | | || || || || ||| Sbjct 2651 GGAACTCCCACTTGC-CTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCCG 2593 Query 100343 TCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACCG 100399 |||| |||||| || | || || || | ||| |||||||||| | |||||| || Sbjct 2592 TCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTCG 2533 Query 100400 TCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTG 100459 | || | ||||| ||||| || || || ||||| ||||| || || | ||| || Sbjct 2532 TAAT---CATGGACGCCAGTCCAGCCACGACCATACATAGCAACACCGACTACAATCTTC 2476 Query 100460 CGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCG 100519 || | ||| ||||| | | |||| || || || | |||| || Sbjct 2475 TTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAGGTTTCC 2416 Query 100520 TTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGA 100575 || || ||||| |||||||| | | ||||| | | |||| |||| ||||| Sbjct 2415 TTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCG---TTTGA 2360 Query 100576 CCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAA 100634 |||||| || || || || || ||||| |||||| || | ||| | | ||||| || Sbjct 2359 CCAGGCTCCCTTGAAGTCATAACTCATCAAGAAA-ATATGATCCATATAATTTTGAGCCT 2301 Query 100635 CGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGT 100694 | |||| | || || ||||| || | || | || || || || || |||| Sbjct 2300 TGCCGTAGTCAACGACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGT 2241 Query 100695 ACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAA 100753 | | || || | | || || || | || |||||| | || ||||| |||| ||| Sbjct 2240 ATTTCTTACCATTCTT-AGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAA 2182 Query 100754 ATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTTGCCG 100813 | || || | || || | | || ||| ||||| || |||||||| Sbjct 2181 CTTACATAGCAATCACCATCT---TCTGGGCTACCGAGATCAGGGTTAGCACCTTTGCCA 2125 Query 100814 CCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCC 100873 || || |||||||| || || || || || || || || ||||| | | || ||| Sbjct 2124 CCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGGAACTCC 2065 Query 100874 TTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGG 100930 || || || | |||||| || | | | | | || | ||| |||| || Sbjct 2064 TTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACAAAAAAGAAGAAAGGA 2008 Query 100931 TCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTG 100990 || | | |||||| || || || || || ||||| || | | || || |||||| Sbjct 2007 TCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTTAATTCAGG----GCGAGCTTG 1952 Query 100991 GCC----GCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCC 101046 | ||||| || || || ||||| ||||| ||||||||||||| |||| || Sbjct 1951 TTTTAATGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCC 1892 Query 101047 CTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACG 101106 ||||| |||||||||| ||| ||||| |||||||| || | ||||||||| || ||| Sbjct 1891 TTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACG 1832 Query 101107 ACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTT 101166 || ||||||| |||||||| |||| ||||||||| ||| ||| | | ||| || Sbjct 1831 GCCGCTGCAGGACCGCTGCAGTGCTTGAAAACTGCCTTCAATCTCTTTTAAGCTGTCATT 1772 Query 101167 GAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAG 101226 || |||||| ||||||||||| || || || ||||| | || ||| | ||||| || | Sbjct 1771 GATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTAT 1712 Query 101227 CGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCA 101284 || | || || || || || | || |||||||| ||||| || || ||| Sbjct 1711 AGGTATGCGATCCACGGGGAATTTCCTAGGATAGACGCCCCATTCTACGAAGTAGGCA 1654 >seq14063 Length=7913 Score = 149 bits (164), Expect = 5e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914 || |||| || || | ||||| || || || || || |||||||| ||| | ||||| Sbjct 7186 GCGCACGCCTCCGTGATCACCTTCTGGACGTACTCTCGACCCTTGACCAGTTGCACGTAA 7127 Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTG 24974 ||||| || ||||||| ||||||| || | ||||||| |||| || | |||||||| Sbjct 7126 GCGCACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCATTCTCCCAGTCC 7067 Query 24975 TCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAG 25034 | | |||||||| ||||| || || || |||||| | |||||||||||||||| Sbjct 7066 TTGAGGCCGCCGTCACAGTAGAAGCACTTTGTTTTGTCACCCTGGCCGGTGTAAAAGAAT 7007 Query 25035 CCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTG 25094 || ||||| || |||| ||||| || |||| || ||||||||| || | || | | Sbjct 7006 CCCGCTTCGGCGAGTTCCTCGGGTTTCTGTTTCATACTGCGTGGCCAGTCGCTGAAGGAG 6947 Query 25095 CGCAAACGCGCAGCTTC 25111 |||| || || || || Sbjct 6946 CGCAGGCGGGCCGCCTC 6930 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| || ||||| || || ||||| |||| Sbjct 6787 CGCAGGAAGGGGCACTGGGGCGCCCACCGCTGGTGATCCTTCGCGGGATCGTCACCCGGA 6728 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| | Sbjct 6727 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 6668 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 6667 TAATAGAAGCCATT 6654 >seq26980 Length=2195 Score = 105 bits (116), Expect = 6e-18 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || | || |||| ||| || ||||||||||| ||||||||||| || | Sbjct 1414 TTCCACCTCTCAGTCGTAGTACCAAGTGTAAAGTAGACTCCTTCTGAATATTGTAGTCAG 1355 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 1354 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCTGCAAAAATAAGTCTTTGCTGATCT 1299 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 1298 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 1239 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 1238 TCAACTTCTAGAGTGATAGTCTTGCCAGTCAGTGTCTTCACGAAAATTTGCATT 1185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889 |||| || || ||||| || || ||||||||||| || | || ||| |||||| Sbjct 1850 ACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTGACAGTGT----GCGTCCATC 1795 Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || || || || || ||| |||||||||| |||||||| ||| | ||||| || || Sbjct 1794 TTCAAGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCCTTATC 1735 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 ||| ||| ||| || | | | ||||| |||||| ||| | || || || Sbjct 1734 CTGAATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAGTGTGATAGT 1675 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || |||| || || ||||||||||||||| Sbjct 1674 TTTGCCAGTTAGTGTCTTTACAAAAATTTGCATT 1641 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| ||||| ||||| || ||||| || |||| | ||| | || || Sbjct 1167 CACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCCGATAGTGTCCGCCCATCTTC 1108 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || || || || |||| |||||||| ||||| || | ||| || ||||| Sbjct 1107 CAGTTGCTTTCCGGCGAAAATTAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 1048 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | ||| ||||| || || ||| | || |||||||| Sbjct 1047 AATCTTTGCCTTCACGTTCTCGATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTT 988 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAA 19057 || ||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 987 CCCAGTTAAGGTTTTTACGAAAATTTGCATGATGAATCTGTAATAA 942 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || || ||||| |||||||| ||||| | || ||| | || || Sbjct 1623 CACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTGACAGTGTACGTCCATCTTC 1564 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || ||| |||| || ||||| || || || | || |||||||| Sbjct 1563 CAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTGTCTTG 1504 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | ||||| || || ||| | || |||||||| Sbjct 1503 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTT 1444 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || || ||||||||||||||| Sbjct 1443 GCCAGTCAATGTCTTTACAAAAATTTGCATT 1413 >seq26979 Length=899 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC--- 18889 |||| |||||| ||||| || |||||||||||||| || | || || |||||| Sbjct 743 ACCAAGTGCAAGGTAGATTCTTTTTGAATATTGTAGTCTGACAAAGT----GCGTCCATC 688 Query 18890 -TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || || ||||| || ||| ||||||| ||||| || || ||| | ||||| || || Sbjct 687 TTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATC 628 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || || |||||| ||| | |||||| || Sbjct 627 TTGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAACTTCAAGGGTAATAGT 568 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || | ||||| ||||||||||||||| Sbjct 567 CTTGCCAGTAAGTGTTTTAACAAAAATTTGCATT 534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | |||||| ||||| |||||||| ||||| ||||| | || ||| |||||| Sbjct 290 AACACTAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCTGACAGTGT----GCGTCC 235 Query 18890 ----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTT 18945 ||||| || || || || |||| ||||| || ||||| || | ||| || || Sbjct 234 ATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTT 175 Query 18946 GTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAAT 19005 ||| ||| || || || | | | ||||| || ||| ||| | ||||| Sbjct 174 GTCTTGAATCTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCTAAAGTAAT 115 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || | ||||| |||||||||||||| Sbjct 114 CGTTTTTCCAGTCAGTGTTTTTACAAAAATTTGCAT 79 >seq78339 Length=2434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||| ||||| || | | || | |||| Sbjct 1492 AATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCT 1433 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || ||| |||| | | || ||||| || | ||| || ||||| Sbjct 1432 TCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 1373 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||||| |||||| | ||| ||| ||| ||| || ||| | ||||||||| Sbjct 1372 TGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGTAATGGTT 1313 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT-AAATCTCTTATAAA 19058 ||||| || | ||||| || ||||| |||||||| | |||| | | ||| Sbjct 1312 TTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTGATATCTGTAACAAA 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411378663749344