Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19446 185 7e-42 seq78338 132 4e-26 seq78339 105 5e-18 seq26981 86.0 5e-12 >seq19446 Length=4212 Score = 185 bits (204), Expect = 7e-42 Identities = 761/1190 (64%), Gaps = 25/1190 (2%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || ||||| || || |||||||| |||||||| ||||| | ||| Sbjct 2832 ATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCG 2773 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| |||||| | | |||||| ||| || | ||||| || | || | ||||| Sbjct 2772 CCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGATCTAGCATTGTCATAA 2713 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-A 96006 | | | ||| || ||| | | | || | |||| | |||| || || ||||| | Sbjct 2712 GTTACAAGATCTCCAGTTGATGGTCTGAAGA-CGTAAGGTGCTTGGGCGACATTGTCGTA 2654 Query 96007 ATTTAACAATATATTTGTTT-----ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 || ||| || || ||||| || || | | || ||||| || || Sbjct 2653 ATGGAACTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCC 2594 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || ||| Sbjct 2593 GTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 2534 Query 96122 GTAATTTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCG 96181 ||||| || ||||||||||| ||||| ||||| || || || || | ||| || Sbjct 2533 GTAATCATGGACGCCAGTCCAGCCACGACCATACATAGCAACACCGACTACAATCTTCTT 2474 Query 96182 CGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCTC 96238 || | ||| || || || | ||| ||| || | ||| | |||| || Sbjct 2473 AGGATTCACTCCCTG---TGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAGGTTTC 2417 Query 96239 GTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCA 96298 || || ||||| |||||||||| || ||||| | ||| | | | ||||||||| Sbjct 2416 CTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCGTTTGACCA 2357 Query 96299 CGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTC 96358 || || || || || || ||||| | || || | || | | ||||| || | | Sbjct 2356 GGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCC 2297 Query 96359 GTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGT 96418 ||| | || || ||||| || || || || || ||| || || ||||| | Sbjct 2296 GTAGTCAACGACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTT 2237 Query 96419 TTTGCCCGTTTGCAGTTGCAACT-CGTCTAACATCACGCGCAATTCCTTTAATAGAATGT 96477 || || | | || || | | | || | |||| | || ||||| || | | | | Sbjct 2236 CTTACCATTCTT-AGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTA 2178 Query 96478 TGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCG 96537 || ||| | || ||| | | ||||| ||||| || ||||| || || | Sbjct 2177 CATAGCAATCACCATCT---TCTGGGCTACCGAGATCAGGGTTAGCACCTTTGCCACCAG 2121 Query 96538 GAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGA 96597 | || ||||| ||||| || || || ||||| |||||||| | | || || | | Sbjct 2120 GGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGGAACTCCTTTA 2061 Query 96598 CGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAAC---GGGTCGG 96654 | || | ||||| || | | | | | || | || |||| || || | Sbjct 2060 CTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACAAAAAAGAAGAAAGGATCAG 2004 Query 96655 ACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCG 96714 || ||||| || || ||||| || ||||| || | | || ||| |||| | Sbjct 2003 CAAGCGTCCACCCACCAATAGAGGGAAGAATCTTTAATTCAGGGCGAGCTTGTTTTAATG 1944 Query 96715 CCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCG 96774 ||| || || ||||||||||||||||||||||||||||| | ||||| || ||||| | Sbjct 1943 ACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTGTG 1884 Query 96775 GTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGC 96834 ||||||||| ||| ||||| || ||||| || | ||||| || || |||||| || Sbjct 1883 GTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTGC 1824 Query 96835 AAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCCGT 96894 | || || ||||| |||| |||||| || || ||| | | || || | ||||| Sbjct 1823 AGGACCGCTGCAGTGCTTGAAAACTGCCTTCAATCTCTTTTAAGCTGTCATTGATGCCGT 1764 Query 96895 CGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTT 96954 | ||||| ||||| || ||||| ||||| | |||||| | | || || | || | Sbjct 1763 CACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGTATGC 1704 Query 96955 TGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 ||||| || || || | | ||| ||||||||||| || || || ||| Sbjct 1703 GATCCACGGGGAATTTCCTAGGATAGACGCCCCATTCTACGAAGTAGGCA 1654 >seq78338 Length=1389 Score = 132 bits (146), Expect = 4e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | |||||||| ||| || ||||| || ||||| || |||||||| | | Sbjct 254 CCTCCTCGCAGACGCAGTACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCAGAC 195 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||| |||||||| ||||||| || ||||| || || Sbjct 194 AGGGTGCGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCAGGTGGG 135 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| |||| ||| || || | | | |||||| ||||||| Sbjct 134 ATGCCTTCTTTGTCTTGGATTTTAGCT--TTTACATTTTCAATAGTGTCAGAGGGCTCCA 77 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| || || ||||| || || ||||| |||||||||||||| Sbjct 76 CTTCCAGGGTAATAGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 28 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| || || || ||||| ||||||||||| | || || | | ||| Sbjct 1151 AGAACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 1092 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | ||||| ||||||||||| || | |||||| ||||| Sbjct 1091 TCCAACTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 1032 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| |||||| ||||| ||||||| Sbjct 1031 TGGATCTTAGC--CTTAACATTTTCGATGGTGTCGGATGGCTCCACTTCCAATGTGATGG 974 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || || ||||| |||||||| Sbjct 973 TCTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 940 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| ||||| |||||||| || || || |||||||| | | Sbjct 710 CCTCCTCGGAGACGGAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 651 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || ||||| ||| | || || || ||||| || ||| Sbjct 650 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGAGGA 591 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||| | ||| || || | | | ||| || ||||| Sbjct 590 ATTCCTTCTTTGTCTTGAATCTTAGCT--TTAACATTTTCAATAGTATCAGATGGCTCAA 533 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||| || ||||| || || || ||||||||||| || |||||| Sbjct 532 CTTCCAAGGTTATTGTTTTGCCAGTAAGTGTTTTGACAAATATTTGCATT 483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | | ||||| |||| |||||||| || || || |||||||| | Sbjct 938 CCTCCTCGCAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 879 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || ||||| || |||| || || |||||||| || Sbjct 878 AGAGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATTAGGCGTTGTTGGTCTGGGGGA 819 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | |||||| ||| || Sbjct 818 ATACCCTCTTTGTCTTGGATCTTTGCT--TTAACATTTTCAATAGTGTCTGAGGGTTCAA 761 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| ||||| || || || || || ||||| |||||||| Sbjct 760 CTTCTAATGTGATAGTTTTGCCTGTGAGTGTCTTTACAAAGATCTGCAT 712 >seq78339 Length=2434 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || || || || ||||| ||||||||||||| Sbjct 1507 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1448 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||||||| || || ||| |||| | || ||||| || ||| Sbjct 1447 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 1388 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||||| | || || | | | ||||||| || || | Sbjct 1387 ATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACT 1328 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || |||||||| || || || ||||| || ||||||||||||||| Sbjct 1327 TCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTG 1277 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||| | ||| || || || |||||||| || || || || | Sbjct 1735 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 1676 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||| || || ||| |||| |||| ||||||||| || Sbjct 1675 AATGTACGGCCATCTTCCAATTGCTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGA 1616 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || ||||| |||||| | | | ||||| ||||| Sbjct 1615 ATACCTTCTTTGTCTTGGATCTTTGC--CTTCACGTTTTCAATTGTGTCAGAAGGCTCTA 1558 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | |||||||||||||| || || || || ||||| ||||||||| Sbjct 1557 CTTCTAACGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCATT 1508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| | | |||||| | ||| || |||||||||||||| ||||||||||| | Sbjct 2191 CCACCTCGCAAACGCAGTACTAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAT 2132 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||||||| ||||| ||| | ||||| || ||||| || || Sbjct 2131 AAAGTACGCCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 2072 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||| || ||| | ||| || | | | ||||| |||||| Sbjct 2071 ATGCCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 2012 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || || || || || || ||||| || ||||| Sbjct 2011 TCCAGGGTTATAGTCTTGCCTGTTAGGGTCTTAACAAATATTTGCAT 1965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||||| || || |||||||| || || || |||||||| | | Sbjct 2419 CCGCCTCGGAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 2360 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| ||| ||||| ||| | || || || |||||||| || Sbjct 2359 AGAGTGCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCAGGGGGG 2300 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || || | |||||| | | | ||||| || || | Sbjct 2299 ATACCCTCCTTATCCTGTATCTTAGCCTTCACATTCTCAATTGTGTCAGATGGTTCTACT 2240 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| ||||| |||| ||||||||||| || ||||| Sbjct 2239 TCCAGGGTAATGGTCTTTCCTGTCAATGTTTTGACAAATATTTGCAT 2193 >seq26981 Length=233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||||| || || || ||||| || |||||||| | | || | || Sbjct 221 AGTACTAAATGCAAAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGTGTACGTCCATCT 162 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| |||||||| ||||||| || ||||| || ||| | ||| |||||||| Sbjct 161 TCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCT 102 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||| || || ||| | || || ||| Sbjct 101 TGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAATGTAATTGTT 42 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||||||||| || ||||| Sbjct 41 TTTCCAGTAAGTGTTTTGACAAAGATTTGCAT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401966940766240