Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq227148 536 2e-147 seq36366 123 3e-23 seq242670 105 8e-18 seq352311 100 4e-16 seq187312 86.0 8e-12 >seq227148 Length=2115 Score = 536 bits (594), Expect = 2e-147 Identities = 1103/1622 (68%), Gaps = 45/1622 (3%) Strand=Plus/Minus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 |||||| | || || | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 1836 ATTTTACCTTTATCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTCCGTAAGTAG 1777 Query 61892 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 61951 |||||||| ||||||| ||| | |||| ||| ||||| ||| ||||||||| | Sbjct 1776 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATAGACGTTAGTTTCCCA 1717 Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 || | || | || | ||| || || | |||||| ||||| || || || ||||| || Sbjct 1716 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGGCTTTGGTCTATAAACGCTCCTCTA 1657 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62070 || || ||||| | ||| || || ||| ||| ||||| | ||||| || || || Sbjct 1656 TCAGCCGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 1597 Query 62071 CTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCT 62127 |||| | |||| |||| |||| ||| || || |||||| | || || Sbjct 1596 CTTATT-TCTTTAGGAATTTTTGCAATATCTTGTATAGATCCATTGTTGTAAATTATAAG 1538 Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62187 ||| || || || |||| |||||| | | || ||| | | || || || | || Sbjct 1537 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTGAGAAGGTGATGGTT 1478 Query 62188 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62247 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 1477 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTTC 1418 Query 62248 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | ||| Sbjct 1417 AAAAGATTCAGTGTTACCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGGGCTATCAA 1358 Query 62308 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 62367 | | ||| | | ||||| | ||| || || ||||| || | |||| | |||||| Sbjct 1357 CAGAGAATTGCGCAAACCGTGTTTTCCTATCTTGTCTTTGAGGGCAGCCCAGTCCCAAAG 1298 Query 62368 ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATC 62426 || | || ||||| ||||| | || || | || | Sbjct 1297 GTCTGTAGGAGTTTTGTCCCACATATCATACTGTAGGATACCTTGGCTTGCTGGACTC-C 1239 Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486 || |||||| ||||| ||||| || || |||| ||||||||| || |||||||||| Sbjct 1238 CTTGATATGTGCTGTATGTGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 1179 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT--TGCGCTTCCAGGCTATCAAA 62544 | |||||||| ||||| || || | | ||| |||| | ||| || || || || | Sbjct 1178 CATAATAAATTGTTTCAAATATTTGTTGATTGAGATGTATTGCTTTTTCA--CTTTCGTA 1121 Query 62545 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 || || | | | | | |||||| ||||| | || |||||||||||||| ||||||| Sbjct 1120 AGG-TATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTC 1062 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 | |||||| |||| || ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1061 TGTGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1002 Query 62664 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 | || | |||| | ||||| ||||| | || || | || ||||| ||||| Sbjct 1001 TGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAACTTTTTAAAATTAAATC 945 Query 62721 GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 | || | ||||||||||| | ||| | || || || |||||||| || || || | Sbjct 944 TCTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTACAAACTGCCACTTCTT 885 Query 62781 TAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 | || | | ||||| | | ||||||||||||||| ||||| || || || || | Sbjct 884 ---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATTGTGCCAA 828 Query 62838 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 62897 ||||| |||||||||||| ||||||| ||||||||||| | ||| |||| ||||||| Sbjct 827 GATTTTTTTGATTACTCTTCCTGTTACAAGCATCCTTATATAACATGTATGGTGTACCAG 768 Query 62898 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAG 62951 | || | || | ||||||||| | ||||| | || |||| ||| | ||||| Sbjct 767 TCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCGGACTTGTTTTATAA 708 Query 62952 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63011 || || | |||| | || ||| ||||| | | |||||| || ||||| || Sbjct 707 ATC-GTGTTTCTTCT-----TCATATTTGGTATATAGTTCTTCGAATTCCTCTCCATAAC 654 Query 63012 CATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63071 | | || || ||||| |||| |||||||| | ||| | | |||| | | Sbjct 653 AGTCAGCGAGGCCGGGACAATCATGAGGACACATGAGACTCCAAACGTCATCATTTTCTA 594 Query 63072 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 63131 ||| ||||||||| |||||||||||||| | ||| ||| || ||||| | ||| || Sbjct 593 CTCTTTTCATAAACAGATCAGGAATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 534 Query 63132 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63191 | || || ||||||||||| || | ||| | |||| | | || || | |||||| || | Sbjct 533 CTTCCTTACCTGTATTCTTCTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCT 474 Query 63192 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63251 | || || || || | | ||||| ||||||||||| || ||||||| ||||| || | Sbjct 473 CTAAATAAATTGCAAATGCACCAGGGCGTTTGTTTCCACCTTGATCTACATATCTGGCAG 414 Query 63252 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGA 63311 | || ||||| |||||||||||||| | | |||||| || ||||| || || | | Sbjct 413 TATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACGCCATTAGTGCCAGCTA 354 Query 63312 TATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 | || || ||| || | || || || || || |||||| || || || | Sbjct 353 TGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGAT 298 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 ||||| |||||||| || ||||||| |||||| | || || || || ||||| || || Sbjct 297 TTAGAAATTAATGCACACTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTC 238 Query 63428 AT 63429 || Sbjct 237 AT 236 >seq36366 Length=4232 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || ||| ||| | ||| ||| || || | ||||||||| || ||||| |||| Sbjct 2356 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCACGTTTTT 2415 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||||||||| || ||||| || || || || |||||||| ||||||||||| | Sbjct 2416 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCTTCAACTGCCGCAAAAG 2475 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 32857 |||||| | ||||| || | || ||| || ||||||| | ||||| || Sbjct 2476 CAATAATACGTTCTCC--AAATGTAGCAGTCTTGCTGCCGATCCACTGTAATGCCCAGTC 2533 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||||||| |||||||| || | ||||| || |||||||| Sbjct 2534 TGCCTTCTTCTTTACACACGGTAGAGTCTCAATTGCATTAAA 2575 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| || ||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 3607 TTGGATAAGTCTACTTCTTCCGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 3666 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || ||||| ||||||| ||||| || ||||| || | ||||||| Sbjct 3667 CATATGTCTGGATATTGGATTGGGAATATAACGAAACGTCTTGGATT 3713 >seq242670 Length=698 Score = 105 bits (116), Expect = 8e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 390 CTTATTGTCTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 449 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||||| ||| Sbjct 450 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTATTTTT 500 >seq352311 Length=307 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || |||||||||| ||| |||| || ||||| || || | |||||||||||| Sbjct 278 TTCTTGGTGTCTTTGTGTAAATTGGATATTGCGATTCTGGCAGCCAAAATGGCATAATCG 219 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || ||||| Sbjct 218 GGATGATCTGTTGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCCGTT 159 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 158 GTTACACCAGAATATATGCC 139 >seq187312 Length=1851 Score = 86.0 bits (94), Expect = 8e-12 Identities = 242/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 155184 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 155241 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 1037 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 1094 Query 155242 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 155301 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 1095 GAAAAAATGTCCAAATGGTATGTTTTCTGAGATTAAATATGATGGAGAACGGGTTCAAGT 1154 Query 155302 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTTA 155361 |||||||| || ||||| | ||| | | | | ||||||||| | || | Sbjct 1155 GCATAAAAAGGGAAATGAGTTCAAATATTTTTCTCGTGCCTTAAAACCAGTAATGGCTCA 1214 Query 155362 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155421 ||||| | || | ||||| || |||| ||||||||| |||| | | | Sbjct 1215 CAAAGTTAGTCATTTTAAAGATTATTTACCAAAAGCATTTCCTAAAGGAGATGATTTGAT 1274 Query 155422 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAG 155478 |||||| ||||| | || | || || | ||| || ||| | || || || | Sbjct 1275 TTTGGATGCTGAAGTACTTATGGTTGATGTGAATACTGGAAAACCATTGCCTTTCGGTAC 1334 Query 155479 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155538 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 1335 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 1394 Query 155539 CTGTTTGTA 155547 || ||||| Sbjct 1395 TTGCTTGTA 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628624913209600