Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq78339 140 8e-28 seq422991 127 5e-24 seq26980 127 5e-24 seq26979 125 2e-23 seq78338 120 7e-22 seq78340 107 4e-18 >seq78339 Length=2434 Score = 140 bits (154), Expect = 8e-28 Identities = 175/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | ||| | |||| || ||||||||| || || ||||||| Sbjct 1508 TCCACCACGGAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 1449 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| ||||| ||||| || || |||| ||| |||||| ||||| Sbjct 1448 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGA---TCTGG 1392 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || || || ||||||||||| || ||||| |||| ||| | ||| Sbjct 1391 AGGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTC 1332 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 ||||| | || || || || || || || || || ||||| ||||||||| || ||| Sbjct 1331 AACTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTGATAT 1273 Score = 116 bits (128), Expect = 9e-21 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | | || || || ||||| ||||| ||||| || || Sbjct 1700 TTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAATTGCTTTCCAGCAAA 1641 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | |||||| |||||| || |||||||| || ||||| || || ||||| Sbjct 1640 AATGAGCCTCTGTTGG---TCTGGGGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCAC 1584 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | |||||||| | |||||| || || || || |||||||| Sbjct 1583 GTTTTCAATTGTGTCAGAAGGCTCTACTTCTAACGTGATGGTTTTTCCAGTAAGAGTCTT 1524 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 1523 AACAAAGATCTGCATT 1508 >seq422991 Length=614 Score = 127 bits (140), Expect = 5e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || ||||| | ||| ||| ||||| || || ||||| | Sbjct 17 CCTCCGCGAAGCCGAAGCACAAGATGTAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 76 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| ||||| || || ||||||| || || || ||| Sbjct 77 AATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 136 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || ||||| || |||||||||| ||| | ||| || Sbjct 137 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCTATAGTATCAGAGGCTTCCACC 196 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486 || || || || || || || || || ||||||||||| || |||||| || | | ||| Sbjct 197 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGACTGTAA 256 Query 288487 TAT 288489 ||| Sbjct 257 TAT 259 >seq26980 Length=2195 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||| | || |||||||| ||||| | || |||||||| || Sbjct 1376 TCCTTCTGAATATTGTAGTCAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCTGCAAAA 1317 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | || ||| |||||| ||||| ||||||||||| ||||||||||| || Sbjct 1316 ATAAGTCTTTGCTGA---TCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACA 1260 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 1259 TTTTCAATTGTATCAGAAGGCTCAACTTCTAGAGTGATAGTCTTGCCAGTCAGTGTCTTC 1200 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 1199 ACGAAAATTTGCATT 1185 Score = 120 bits (132), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||||||||||| ||| |||||||| ||||| | |||||||||||| || Sbjct 2061 TTCCTTTTGTATATTATAGTCGGAGAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAA 2002 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | |||||| ||||| || |||||||||||||| || || || || || Sbjct 2001 AATAAGCCTTTGTTGA---TCTGGAGGAATGCCTTCTTTATCCTGAATCTTGGCCTTGAC 1945 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | ||| ||||| | || || || || || || || ||||| Sbjct 1944 ATTTTCAATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTAAGTGTCTT 1885 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1884 CACAAAAATTTGCATT 1869 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||| || | || || ||||| ||||| | ||||||||||| || Sbjct 1605 TTCCTTCTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAA 1546 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | |||||| | ||||| |||||||| || || ||||| || || || || Sbjct 1545 AATTAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTGTCTTGAATTTTTGCCTTAACATT 1486 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||||| | ||| | ||||||||| | ||||| || || || |||| ||||| || Sbjct 1485 TTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTTGCCAGTCAATGTCTTTAC 1426 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 1425 AAAAATTTGCATT 1413 Score = 107 bits (118), Expect = 4e-18 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||||||||| | || || || || ||||| | ||| ||||| ||||| Sbjct 1149 TTCCTTCTGGATATTATAGTCCGATAGTGTCCGCCCATCTTCCAGTTGCTTTCCGGCGAA 1090 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | |||||| |||| || || ||||| || || || || || || ||||| Sbjct 1089 AATTAGTCTCTGTTG---ATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCAC 1033 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| | ||||||||| | ||||| || ||||| || | || || Sbjct 1032 GTTCTCGATTGTATCAGAAGCTTCTACTTCCAATGTGATGGTTTTCCCAGTTAAGGTTTT 973 Query 288459 GACGAATATCTGCATTATG 288477 ||||| || ||||| ||| Sbjct 972 TACGAAAATTTGCATGATG 954 >seq26979 Length=899 Score = 125 bits (138), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||||||||| | || |||||||| ||||||| ||||| || ||||| Sbjct 498 TTCCTTTTGAATATTATAGTCAGACAGAGTGCGTCCATCTTCTAGCTGTTTGCCAGCGAA 439 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||| |||| || || ||||| |||||||| ||||| || || || Sbjct 438 AATCAGCCTTTGTTG---ATCTGGAGGAATACCTTCCTTATCCTGAATTTTTGCCTTAAC 382 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| ||||| | ||||| || || || ||||| || || Sbjct 381 ATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTGATTGTTTTGCCTGTCAGTGTTTT 322 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 321 AACAAAAATTTGCATT 306 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||||||||| || | || |||||||| ||||| | ||| ||||| ||||| Sbjct 270 TTCCTTTTGGATATTATAATCTGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCAGCGAA 211 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||||| |||| || || ||||| || || || || || || || || Sbjct 210 AATCAGTCTTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAAC 154 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| ||||| | || ||||| || || ||||| || || Sbjct 153 ATTTTCAATTGTATCAGAAGCTTCCACTTCTAAAGTAATCGTTTTTCCAGTCAGTGTTTT 94 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 93 TACAAAAATTTGCAT 79 >seq78338 Length=1389 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | ||| | || |||||||||||| || ||||| | Sbjct 1167 TCCACCACGAAGACGAAGAACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGA 1108 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 1107 CAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATAAGACGCTGTTG---GTCTGG 1051 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || || ||||| || || || || ||||| || | ||| | || Sbjct 1050 GGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATGGTGTCGGATGGCTC 991 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| |||||||| || || ||||| || || |||||||| Sbjct 990 CACTTCCAATGTGATGGTCTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 940 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || | || | || |||||||| ||||| || || | Sbjct 483 TCCACCACGGAGACGAAGCACTAAGTGCAGAGTCGACTCTTTTTGAATATTGTAATCAGA 424 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 | ||||| || ||||| ||||| || || || || || ||||||||||| ||| Sbjct 423 CAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTG---GTCTGG 367 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || |||||||| || || || ||||| || || || | || | ||| Sbjct 366 GGGGATGCCCTCCTTATCCTGTATCTTAGCCTTCACATTCTCAATTGTGTCAGATGGTTC 307 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| || || || ||||| || || || |||||||| ||||| ||||| Sbjct 306 TACTTCCAGGGTAATGGTCTTGCCTGTTAGGGTCTTGACAAATATTTGCAT 256 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||||| | || | ||| ||||| |||||||| ||||| | Sbjct 710 CCTCCTCGGAGACGGAGTACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAC 651 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || ||||| ||||| ||||| |||||| ||||| Sbjct 650 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGACGTTGTTGA---TCTGGA 594 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || || || ||||| || ||||| |||| ||| | || Sbjct 593 GGAATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGATGGCTCA 534 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || || || || || ||||| ||||| |||||| Sbjct 533 ACTTCCAAGGTTATTGTTTTGCCAGTAAGTGTTTTGACAAATATTTGCATT 483 >seq78340 Length=230 Score = 107 bits (118), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| | ||| | || ||||||||| ||||| ||||| | || || || || || Sbjct 219 AAGTACTAAATGTAAAGTAGATTCTTTTTGAATATTGTAGTCAGAAAGTGTACGACCATC 160 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| ||||| || |||||||| || ||||| |||||| ||||| || |||||||| Sbjct 159 TTCCAATTGCTTGCCTGCGAAAATAAGACGTTGTTGA---TCTGGAGGAATGCCTTCTTT 103 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || ||||| || || || ||||| || | || | ||| ||||| | || || Sbjct 102 ATCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAATGTAAT 43 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || || ||||| Sbjct 42 TGTTTTTCCAGTAAGTGTTTTAACAAAGATTTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1170099488375328