Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq19446 159 2e-34 seq78338 109 4e-19 seq26980 107 1e-18 seq422991 105 4e-18 >seq19446 Length=4212 Score = 159 bits (176), Expect = 2e-34 Identities = 587/902 (65%), Gaps = 33/902 (4%) Strand=Plus/Minus Query 5654 TCGTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCG-A 5712 || || || || | ||| |||||||| ||||| || ||||| || | | |||||| | | Sbjct 2529 TCATGGACGCCAGTCCAGCCACGACCATACATAGCAACACCGACTACAATCTTCTTAGGA 2470 Query 5713 TTCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGG 5772 ||| || | ||| |||| || | | || || | ||||| || || | ||| Sbjct 2469 TTC-ACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAGGTTTC-CTTGG 2412 Query 5773 G-TTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGATC--CGTTAACGACCAGGC 5829 | ||||| | || ||||||| ||||| || ||||| ||| |||| |||||||| Sbjct 2411 GATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCGTTT--GACCAGGC 2354 Query 5830 ACCCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGCGTA 5889 |||||| |||| || |||| | || || ||||| | ||| |||| || || |||| Sbjct 2353 TCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCCGTA 2294 Query 5890 GTCGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCAATTGTAACCGTTT 5949 ||| || || | ||| || || ||| |||| |||||| || |||| | || Sbjct 2293 GTCAACGACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTT 2234 Query 5950 ACCCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAGTGTA 6009 ||| ||| | | || || |||||| | || | ||| || |||| || Sbjct 2233 ACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACT----TA 2178 Query 6010 CGTATTGCGGTC--CACCT-CGGCATTACCCAACACAGGATTAGCACCCTTTCCACCCGG 6066 | || || || || || | | |||| | |||| |||||||| || ||||| || Sbjct 2177 CATA--GCAATCACCATCTTCTGGGCTACCGAGATCAGGGTTAGCACCTTTGCCACCAGG 2120 Query 6067 AAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCGGAC 6126 |||||||| || || || || || || ||||| |||||||| || ||||| || Sbjct 2119 GAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGGAACTCCTTTAC 2060 Query 6127 ACTTGTGAC-GAACACCTTACGTT----TGGAGTCATCGTTCATAAAATAA-AACGGATC 6180 |||| | ||| | ||| | || | || || |||| || || ||||| Sbjct 2059 -----TGACTGCACAAATCGTGTTCTCTTAGATTTGTCAA-CAAAAAAGAAGAAAGGATC 2006 Query 6181 GCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTGACGTTTGAT 6240 | ||||||||| || || || || || | | || |||| |||| | Sbjct 2005 AGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTTAATTCAGGGCGAGCTTGTTTTAA 1946 Query 6241 GGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCTG 6300 | ||| | ||||||||||| || ||||| | ||||| | | | ||||| || Sbjct 1945 TGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTG 1886 Query 6301 TGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAGC 6360 ||||||||| || || ||||| ||||| || || |||||||| || || || Sbjct 1885 TGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCT 1826 Query 6361 GCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATCTGCTTGAGGGCGTCGTTTATG 6418 |||||| ||| || || | ||| | || ||||| || | | ||| || ||| Sbjct 1825 GCAGGACCGCTGCAGTGCTTGAAAACTGCCTTC--AATCTCTTTTAAGCTGTCATTGATG 1768 Query 6419 CCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGT 6478 |||| ||| || ||||||||||| || ||||| |||| || || ||||||||||| ||| Sbjct 1767 CCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGT 1708 Query 6479 ACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACG 6538 | || | ||| || | || ||| || ||||| || ||||| || ||||| || Sbjct 1707 ATGCGATCCACGGGGAATTTCCTAGGATAGACGCCCCATTCTACGAAGTAGGCACCCACA 1648 Query 6539 AC 6540 || Sbjct 1647 AC 1646 >seq78338 Length=1389 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| ||||||||||| || ||||| || || | || |||| Sbjct 923 AATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCC 864 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || || || || ||||| ||||| |||||| | || | ||||| ||||| Sbjct 863 TCCAGCTGCTTGCCAGCGAAAATTAGGCGTTGTTGGTCTGGGGGAATACCCTCTTTGTCT 804 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || | | || | || || ||||| || | || || ||| Sbjct 803 TGGATCTTTGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTT 744 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| ||||||||||||||| Sbjct 743 TTGCCTGTGAGTGTCTTTACAAAGATCTGCATA 711 Score = 91.5 bits (100), Expect = 9e-14 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| |||||||| || | || |||| |||| |||||| || ||||| Sbjct 1131 TTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAA 1072 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | ||||||||||| ||||| || || Sbjct 1071 GATAAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATT 1012 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | ||| || || | || ||||| || || || || ||||| || Sbjct 1011 TTCGATGGTGTCGGATGGCTCCACTTCCAATGTGATGGTCTTCCCAGTAAGTGTCTTAAC 952 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 951 AAAGATCTGCATA 939 >seq26980 Length=2195 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | || ||||| || | || |||||||||||| || ||||| | Sbjct 1870 TTCCACCTCTCAGGCGCAGTACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTG 1811 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | ||| |||| || || || ||||| ||||| || |||| |||||| ||| | | Sbjct 1810 ACAGTGTGCGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 1751 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||| || ||||||| ||| || | | || | ||| | ||||| Sbjct 1750 GAATACCCTCCTTATCCTGAATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 1691 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 1690 CTTCCAGTGTGATAGTTTTGCCAGTTAGTGTCTTTACAAAAATTTGCAT 1642 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | | || || ||||| | || ||| |||||||| ||||| || | Sbjct 1642 TTCCACCCCTAAGGCGCAGCACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTG 1583 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | ||| |||| |||||||||||||| ||||| ||||| | || ||||| | | Sbjct 1582 ACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAG 1523 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || || || | |||| | ||| || || | Sbjct 1522 GGATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTA 1463 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || || | ||||| ||||| || ||||| Sbjct 1462 CTTCCAATGTGATGGTTTTGCCAGTCAATGTCTTTACAAAAATTTGCAT 1414 >seq422991 Length=614 Score = 105 bits (116), Expect = 4e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| || |||||||| ||||| || | | ||| |||| || | Sbjct 36 CAAGATGTAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTA 95 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 ||||||| || ||||| || | ||||||||||||| | || | || ||||| || | Sbjct 96 GCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGA 155 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| ||| || | |||| | ||| ||| || || || | ||| |||||||| | Sbjct 156 TCTTAGCTTTTACATTTTCTATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTAC 215 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || ||||| Sbjct 216 CCGTAAGGGTCTTGACGAAAATTTGCAT 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322132413356928