Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq26979 156 6e-33 seq78340 143 4e-29 seq78339 143 4e-29 seq26981 134 2e-26 seq26980 132 7e-26 seq78338 131 2e-25 seq36366 120 4e-22 >seq26979 Length=899 Score = 156 bits (172), Expect = 6e-33 Identities = 164/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| ||||||||||||| ||||| |||||||| |||| |||| Sbjct 79 ATGCAAATTTTTGTAAAAACACTGACTGGAAAAACGATTACTTTAGAAGTGGAAGCTTCT 138 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || || || ||||| || |||||||| |||||||| ||| Sbjct 139 GATACAATTGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 198 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| || || ||||| || |||||| | || | |||||||||| Sbjct 199 CAAAGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGACGCACACTGTCAGATTATA-- 256 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| || | || | || |||||||| Sbjct 257 ATATCCAAAAGGAATCTACTTTGCACTTAGTGTT 290 Score = 140 bits (154), Expect = 5e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||||||| |||| || ||||| || ||||||||||| |||| ||| Sbjct 306 AATGCAAATTTTTGTTAAAACACTGACAGGCAAAACAATCACATTAGAAGTGGAAGCTTC 365 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| || ||||| ||||| || |||||||| || Sbjct 366 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGATAAGGAAGGTATTCCTCCAGATCA 425 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| |||||| || || || ||||| |||||| | ||| | || || ||||| Sbjct 426 ACAAAGGCTGATTTTCGCTGGCAAACAGCTAGAAGATGGACGCACTCTGTCTGACTATAA 485 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| || | || || || ||||| Sbjct 486 TAT-TCAAAAGGAATCTACACTGCACTTAGT 515 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| ||||||| ||||| || ||||| ||||| |||| ||| Sbjct 762 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACCATCACATTGGAAGTTGAAGCTTC 821 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||||| ||||| ||||||||||| || ||||| || Sbjct 822 AGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCA 881 Query 155942 ACAAAGATTGATTTATGC 155959 ||| |||||||||| ||| Sbjct 882 ACAGAGATTGATTTTTGC 899 >seq78340 Length=230 Score = 143 bits (158), Expect = 4e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| |||||||||||||| |||| ||| Sbjct 7 ATGCAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACATTAGAAGTTGAAGCCTCT 66 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||||||||||||||| |||||||| ||| Sbjct 67 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 126 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || | || || || ||| Sbjct 127 CAACGTCTTATTTTCGCAGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAT 186 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046 || ||||| | || | |||||||| | | |||||||| Sbjct 187 ATTCAAAAAGAATCTACTTTACATTTAGTACTTCGTTTAAGAGG 230 >seq78339 Length=2434 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||||||||| |||||||| |||| ||| Sbjct 1737 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACTATTACGTTAGAAGTTGAAGCCTCT 1796 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| ||||||||||| |||||||| ||| Sbjct 1797 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1856 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || | || || || ||| Sbjct 1857 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAT 1916 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| |||| |||||||| || Sbjct 1917 ATTCAAAAAGAATCGACACTTCATTTGGT 1945 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | ||||||||||| || || |||||||| || ||| Sbjct 1508 AATGCAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACGTTAGAAGTAGAGCCTTC 1567 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||||||| || || ||||| |||||||| || || ||||| || Sbjct 1568 TGACACAATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1627 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || ||||| | |||||| | | || ||||| |||||||| Sbjct 1628 ACAGAGGCTCATTTTTGCTGGAAAGCAATTGGAAGATGGCCGTACATTATCTGATTATAA 1687 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| || | || || |||||||| || Sbjct 1688 TAT-TCAAAAGGAATCTACTCTACATTTAGTATT 1720 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||||||||| ||||| || ||||| | ||||| ||| ||| Sbjct 2193 ATGCAAATATTTGTCAAAACATTGACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 2252 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||| ||||| ||||| || || || || || || ||| Sbjct 2253 GACACAATTGAGAATGTGAAGGCTAAGATACAGGATAAGGAGGGTATCCCCCCTGACCAA 2312 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || ||||| || |||||| | | ||| | || || || ||| Sbjct 2313 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGCACTCTGTCTGACTACAAT 2372 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 2373 ATCCAGAAAGAGTCCACCCTTCACTTGGT 2401 Score = 105 bits (116), Expect = 1e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || | || || || ||||| || | || || || ||| Sbjct 1965 ATGCAAATATTTGTTAAGACCCTAACAGGCAAGACTATAACCCTGGAGGTGGAGCCATCT 2024 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||| || ||||||||||| ||||| || ||||| ||| Sbjct 2025 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGCATTCCCCCAGATCAA 2084 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||| ||||| | |||||| | ||||||||||| || | Sbjct 2085 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGGCGTACTTTATCAGACTACA-- 2142 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||| |||| Sbjct 2143 ACATCCAAAAGGAGTCCACCCTTCATCTAGT 2173 >seq26981 Length=233 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | ||||||||||| |||||||||||||| |||| ||| Sbjct 10 ATGCAAATCTTTGTCAAAACACTTACTGGAAAAACAATTACATTAGAAGTTGAAGCCTCT 69 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| ||||||||||| |||||||| ||| Sbjct 70 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 129 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || | || || || ||| Sbjct 130 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGACGTACACTTTCTGACTACAAT 189 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGG 156046 || ||||| | || | |||||||| | | |||||||| Sbjct 190 ATTCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGG 233 >seq26980 Length=2195 Score = 132 bits (146), Expect = 7e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||||||||||| ||||| || ||||| ||||| |||| ||| Sbjct 1413 AATGCAAATTTTTGTAAAGACATTGACTGGCAAAACCATCACATTGGAAGTAGAAGCTTC 1472 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| ||||| |||||||| || ||||| || || Sbjct 1473 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCTGACCA 1532 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || || ||||| |||||| | || | ||||||||||| Sbjct 1533 ACAGAGGCTAATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 1592 Query 156002 TAT 156004 ||| Sbjct 1593 TAT 1595 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| | ||||| ||||||||||| |||||||| |||| ||| Sbjct 1869 AATGCAAATTTTTGTGAAGACACTTACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTC 1928 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || || || || || |||||||||||||| |||||||| || Sbjct 1929 TGACACAATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGCATTCCTCCAGATCA 1988 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | |||| ||| || || || || |||||| | || | || || ||||| Sbjct 1989 ACAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTCTCCGACTATAA 2048 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 |||| || || | || | |||||||| Sbjct 2049 TATACAAAAGGAATCTACTTTACATTTAGT 2078 >seq78338 Length=1389 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | ||||| ||||| || || || ||||| || || Sbjct 483 AATGCAAATATTTGTCAAAACACTTACTGGCAAAACAATAACCTTGGAAGTTGAGCCATC 542 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || ||| ||| || ||||| |||||||| || |||||||| || Sbjct 543 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 602 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | ||| || |||||||| |||||| | | ||| | || || || || Sbjct 603 ACAACGTCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTGTCTGACTACAA 662 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| | || || || || || Sbjct 663 TATCCAGAAAGAGTCCACCCTGCACTTGGT 692 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || || || || ||||| | ||||| ||| ||| Sbjct 256 ATGCAAATATTTGTCAAGACCCTAACAGGCAAGACCATTACCCTGGAAGTAGAACCATCT 315 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||| ||||| ||||| || ||||| || ||||| ||| Sbjct 316 GACACAATTGAGAATGTGAAGGCTAAGATACAGGATAAGGAGGGCATCCCCCCAGACCAA 375 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| ||| |||||||| | |||||| | ||||| || ||||| ||| Sbjct 376 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 435 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||| || || |||||| Sbjct 436 ATTCAAAAAGAGTCGACTCTGCACTTAGTG 465 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | |||||||| |||||||| | ||||| || ||| Sbjct 28 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACTATTACCCTGGAAGTGGAGCCCTCT 87 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| |||||| ||||| ||||||||||| || || || ||| Sbjct 88 GACACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATCCCACCTGATCAA 147 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || | || || || ||| Sbjct 148 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAT 207 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || |||||||| || Sbjct 208 ATTCAAAAAGAATCCACACTTCATTTGGT 236 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || || |||||||| ||||||||||| ||| || Sbjct 712 ATGCAGATCTTTGTAAAGACACTCACAGGCAAAACTATCACATTAGAAGTTGAACCCTCA 771 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || || ||||| ||||| || || || ||||| ||| Sbjct 772 GACACTATTGAAAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAA 831 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || |||||||| || ||| | ||| | || || || ||| Sbjct 832 CAACGCCTAATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 891 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || |||||| | || | || || || ||| Sbjct 892 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTA 924 >seq36366 Length=4232 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || | ||| ||||||| ||||| ||||| ||||| ||||| || ||||| | || Sbjct 3226 TCCTTAGGATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTT 3285 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 |||||||| || ||||||| ||| || | || || || | ||||| ||| | Sbjct 3286 TCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAG 3345 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 || | ||||| || ||||||||||| ||||| |||| || || || ||||| || ||| Sbjct 3346 AAACGCTCTACTAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAGACA 3405 Query 18593 TATTTAATGAAATGTTTTTCATTATCCTT 18621 | || || |||||||||||| ||| || Sbjct 3406 TGCTTGATAAAATGTTTTTCACAATCTTT 3434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726088601081600