Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq227148 203 8e-47 seq8549 138 3e-27 >seq227148 Length=2115 Score = 203 bits (224), Expect = 8e-47 Identities = 438/646 (68%), Gaps = 17/646 (3%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 |||||||| ||| ||| || || || ||| ||||||||||||| |||| || | ||| Sbjct 218 TCTTGCTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGTATTTTTGATACTTTAAAA 277 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT----ATTCACGTT-CATGATA 110634 | ||| | ||||||||| |||| || || ||| || ||| || ||| | | Sbjct 278 CAGTGTGCATTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 337 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 ||||| || | | || || | || || | || | ||| || || |||| Sbjct 338 ---GCTCAG--GGTTCTTACATAGCTGGCACTAATGGCGTCTCGAATGGTCTAGTGCCAA 392 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA---TG 110751 |||| ||||| | ||| | ||||| | |||||| |||||||||| || | | || Sbjct 393 TGTTGAGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGCCCTG 452 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 | ||||||| || ||| | || ||||||||| | || |||||||| |||||||| | Sbjct 453 GTGCATTTGCAATTTATTTAGAGCCTTGGCATGCGGACATATTTGAGTTCTTAGATTTAA 512 Query 110812 GTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTT 110871 || ||| ||| |||||| ||||| | || | |||||||| | |||||| Sbjct 513 AGAAGAATACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATTC 572 Query 110872 CAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATC 110931 | ||| | || |||||| | || || | ||| | | ||| ||| |||||||||||| Sbjct 573 CTGATCTGTTTATGAAAAGAGTAGAAAATGATGACGTTTGGAGTCTCATGTGTCCTCATG 632 Query 110932 GTTCTCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 || ||| || || |||| ||| |||||| | || || ||||| || || |||||| Sbjct 633 ATTGTCCCGGCCTCGCTGACTGT-TATGGAGAGGAATTCGAAGAACTATATACCAAATAT 691 Query 110991 GAAAAAGAAGGCAAG-TTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCT 111049 ||| ||||| || | ||| |||||| | | ||||||||| | ||| ||| | Sbjct 692 GAAGAAGAA-ACACGATTTATAAAACAAGTCCGAGCTCAAGAGTTATGGAAGTCAATTAT 750 Query 111050 TGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAA 111109 ||| | ||||| || ||||| || || || || || ||||| ||| | ||| | || Sbjct 751 AGAAGCCCAAGTAGAGACTGGTACACCATACATGTTATATAAGGATGCTTGTAACAGGAA 810 Query 111110 ATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||||| ||| | || |||||||| | ||| ||| | ||| Sbjct 811 GAGTAATCAAAAAAATCTTGGCACAATTAAATGTAGCAATCTTTGC 856 >seq8549 Length=4112 Score = 138 bits (152), Expect = 3e-27 Identities = 352/519 (68%), Gaps = 34/519 (7%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||||||||| || | || |||| ||||| ||||||||||| ||||| || ||| Sbjct 686 AAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAACGAGTTGACTTCTCTGCC 745 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGA 305106 |||| ||||||||| |||||| || || ||| || || || || ||||||| || Sbjct 746 AGAACTGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCCTCGCTC 804 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAA-ACATTTG 305164 |||||| ||| ||||||| |||||| ||| | || | || ||| | | | | Sbjct 805 TATTGCTCAAAATTTAACATTCCCAGAGCTAGTAACACCATTTAA-TATAGACAGAATGC 863 Query 305165 AGACGTTGTGTTCTTAATGGAAATAGCA-AGTATCCAGGTGCTCGTGCTGTTATAAAACA 305223 || |||| |||| || |||||| ||| | ||||||||||| | | | | | | Sbjct 864 AGGAGTTG-GTTCGTAGGGGAAAT-GCACAATATCCAGGTGCAAAGTATATAGTCAGAGA 921 Query 305224 CAA--GCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATG 305281 ||| | |||||| | | ||||| || || || ||| | || ||| || Sbjct 922 CAATGGGGAAAGAATAGA-----TTTGAG--ATTTC-ATCCAAAGCCAT-CAG----AT- 967 Query 305282 CTTGAAATTAATGATATTGTTATCA--------GACATTTGAATGACAATGATTGGGTTC 305333 ||| | ||| ||| |||| | | || |||| || |||||| |||| Sbjct 968 -TTGCATTTACA-ATACGGTTACAAAGTGGAGCGCCACTTGAGAGATGATGATTTGGTTA 1025 Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 | ||||| | || || | |||| |||||| |||||||| ||| | ||||||||||| Sbjct 1026 TTTTCAACCGACAGCCCACTTTGCACAAAATGAGTATGATGGGTCACAGAGTCAAAGTAT 1085 Query 305394 TATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 | | | | |||||||| | ||| | ||| | |||| || ||||| ||||||| Sbjct 1086 TGCCGTGGTCTACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCCGATTTTG 1145 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 | || |||||||||||| | |||||||||||||||| || Sbjct 1146 ACGGTGATGAAATGAATTTACATGTACCTCAATCAATGG 1184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177199907089136