Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq78339 123 2e-23 seq78338 113 3e-20 seq26980 111 1e-19 seq26979 111 1e-19 seq422991 89.7 3e-13 >seq78339 Length=2434 Score = 123 bits (136), Expect = 2e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || ||||| || ||||||||||| || || ||||| || || Sbjct 1498 AGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGG 1439 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || ||||| || ||||| ||||| || || || | || ||| Sbjct 1438 CCGTCTTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCC 1379 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||||| | || ||||| || ||||||| || Sbjct 1378 TTGTCT-TGAATTTTCGCTTTTACATTTTCGATAGTGTCGGAAGGTTCAACTTCCAAAGT 1320 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || |||||||| || | |||||||| ||||||||||| ||||| Sbjct 1319 AATGGTTTTACCCGTGAGTGTTTTCACGAAAATCTGCATTTTGAT 1275 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 1735 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 1676 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || ||||| || | | ||||||||| || || Sbjct 1675 AATGTACGGCCATCTTCCAATTGCTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGGGGA 1616 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||| |||| || ||| | ||||||||| ||| || Sbjct 1615 ATACCTTCTTTGTCTTGGATC-TTTGCCTTCACGTTTTCAATTGTGTCAGAAGGCTCTAC 1557 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | || || ||||| |||||||| Sbjct 1556 TTCTAACGTGATGGTTTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 1509 >seq78338 Length=1389 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| |||||||| || ||| || |||||||| || || || || Sbjct 254 CCTCCTCGCAGACGCAGTACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCAGAC 195 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| || || || || || | ||| ||||| || || || Sbjct 194 AGGGTGCGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCAGGTGGG 135 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| ||| || ||||| | ||| ||||| | ||||||| Sbjct 134 ATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTGTCAGAGGGCTCCACT 75 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || |||| ||||| |||||||||||||| Sbjct 74 TCCAGGGTAATAGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 28 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || ||||| ||| |||||||| || ||||| || | || || Sbjct 473 AGACGAAGCACTAAGTGCAGAGTCGACTCTTTTTGAATATTGTAATCAGACAAAGTGCGA 414 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| ||||| ||||| || | |||||||||||| || || | |||||| Sbjct 413 CCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 354 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCAC 34664 || | |||| ||| || | || || | ||||||||| | | ||| ||||||| Sbjct 353 TTATCCTGT-ATC-TTAGCCTTCACATTCTCAATTGTGTCAGATGGTTCT--ACTTCCAG 298 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || |||| || || ||||| || ||||| Sbjct 297 GGTAATGGTCTTGCCTGTTAGGGTCTTGACAAATATTTGCAT 256 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| ||||| || || || Sbjct 1166 CCACCACGAAGACGAAGAACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 1107 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| ||||| || | |||||||||||| || || Sbjct 1106 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 1047 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | ||||| | || ||||| |||||| Sbjct 1046 ATGCCCTCCTTGTCTTGGATC-TTAGCCTTAACATTTTCGATGGTGTCGGATGGCTCCAC 988 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || ||||| |||||||| Sbjct 987 TTCCAATGTGATGGTCTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 940 >seq26980 Length=2195 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| |||| ||| || || | || ||||| ||||| ||||||||||| Sbjct 1640 CCACCCCTAAGGCGCAGCACTAAGTGCAAGGTTGATTCCTTCTGAATATTATAATCTGAC 1581 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| || ||||| |||| | ||||||||| || || Sbjct 1580 AGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATTAGCCTCTGTTGGTCAGGAGGG 1521 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||| | ||||| || ||| || | Sbjct 1520 ATACCTTCTTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCTA 1463 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || || || || |||||||| ||||| Sbjct 1462 CTTCCAATGTGATGGTTTTGCCAGTCAATGTCTTTACAAAAATTTGCAT 1414 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| || ||||| | ||| |||||||| || ||||| || || Sbjct 2096 CCACCTCTCAGACGCAGTACTAAATGTAAAGTAGATTCCTTTTGTATATTATAGTCGGAG 2037 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||||||||| || ||||| || | | ||||| || || || Sbjct 2036 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGATCTGGAGGA 1977 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCAC 34658 | || || || || ||||| || | | ||||||||| ||| ||||| Sbjct 1976 ATGCCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCAGAAGCT-TCCAC 1918 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | || ||||||||||| ||||| Sbjct 1917 TTCTAAAGTAATAGTTTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 1870 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| |||||||| | || || || ||||| || || ||||| Sbjct 1868 CCACCTCTCAGGCGCAGTACCAAATGTAAGGTAGATTCTTTCTGAATATTGTAGTCTGAC 1809 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||||||||| || || ||||| || | | || || || || || Sbjct 1808 AGTGTGCGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 1749 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| || | |||||| | |||||| || ||| || Sbjct 1748 ATACCCTCCTTATC-CTGAATCTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAAC 1690 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || |||| || || |||||||| ||||| Sbjct 1689 TTCCAGTGTGATAGTTTTGCCAGTTAGTGTCTTTACAAAAATTTGCAT 1642 >seq26979 Length=899 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||||||| || || | ||| |||||||| || ||||||||||| Sbjct 305 CCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCTGAC 246 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| ||||| || || || || || | | ||||| || || || Sbjct 245 AGTGTGCGTCCATCTTCCAGTTGCTTTCCAGCGAAAATCAGTCTTTGTTGATCTGGAGGA 186 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || ||||||||| ||| |||| ||||| | |||||| || ||| |||| Sbjct 185 ATGCCTTCCTTGTCT-TGAATCTTTGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCA 128 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || |||||||| || || | ||||| |||||||| ||||| Sbjct 127 CTTCTAAAGTAATCGTTTTTCCAGTCAGTGTTTTTACAAAAATTTGCAT 79 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| ||||| || | || || |||||||| || || ||||| Sbjct 761 CCACCTCTTAGCCGCAGTACCAAGTGCAAGGTAGATTCTTTTTGAATATTGTAGTCTGAC 702 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||||||||| || ||||| || | | ||||||||| || || Sbjct 701 AAAGTGCGTCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 642 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||||| |||||| | ||||||||| ||| || Sbjct 641 ATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 583 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || || || | ||||| |||||||| ||||| Sbjct 582 TTCAAGGGTAATAGTCTTGCCAGTAAGTGTTTTAACAAAAATTTGCAT 535 >seq422991 Length=614 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||| | ||| |||||||||||||| || || || Sbjct 17 CCTCCGCGAAGCCGAAGCACAAGATGTAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 76 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || |||||||| ||||| || || || || ||||| || || Sbjct 77 AATGTACGTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 136 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||| ||| |||||| ||||| | || || || | ||||| Sbjct 137 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCTATAGTATCAGAGGCTTCCACC 196 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 197 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312304720161008