Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq78339 89.7 4e-13 seq78338 89.7 4e-13 seq26981 89.7 4e-13 seq26979 86.0 4e-12 >seq78339 Length=2434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| |||||| | || || ||| | | Sbjct 1737 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACTATTACGTTAGAAGTTGAAGCCTCT 1796 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||||| ||||||||||| |||| || | Sbjct 1797 GACACAATTGAAAAT--GTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATC 1854 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || || |||||||| || | |||| | |||| || |||| Sbjct 1855 AACAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACA 1914 Query 27968 ACATCCAAAAAGA---GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| || ||||| |||||||| ||||| || | || || Sbjct 1915 ATATTCAAAAAGAATCGA-CACTT--CATTTGGTACTGCGTCTGAGAGGAGG 1963 >seq78338 Length=1389 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || ||||| || |||||| | || || || | | Sbjct 28 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACTATTACCCTGGAAGTGGAGCCCTCT 87 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || ||| ||||| ||||||||||| | || || || Sbjct 88 GACACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATCCCACCTGATCAA 147 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || || |||||||| || | |||| | |||| || ||||| Sbjct 148 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAT 207 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||| | |||||||| ||||| |||| || || Sbjct 208 ATTCAAAAAGAATCCACACTTCATTTGGTACTGCGTCTGCGAGGAGG 254 >seq26981 Length=233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| |||||||| ||| |||||| | || || ||| | | Sbjct 10 ATGCAAATCTTTGTCAAAACACTTACTGGAAAAACAATTACATTAGAAGTTGAAGCCTCT 69 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||||| ||||||||||| |||| || | Sbjct 70 GACACAATTGAAAAT--GTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATC 127 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||| || || || |||||||| || | ||| | | || || |||| Sbjct 128 AACAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGACGTACACTTTCTGACTACA 187 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | || |||||||| ||||||||||| || | ||||| Sbjct 188 ATATTCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTT 227 >seq26979 Length=899 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| |||||||| || |||||| |||| || || | Sbjct 534 AATGCAAATTTTTGTTAAAACACTTACTGGCAAGACTATTACCCTTGAAGTTGAGCCTTC 593 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| |||||| || || || || |||| || Sbjct 594 TGACACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGAC 651 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||| || |||||| | || || | ||||| ||||| || ||| Sbjct 652 CAACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGACGCACTTTGTCAGACTAC 711 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 || || |||||||| || ||||| ||||| |||| Sbjct 712 AATATTCAAAAAGAATCTACCTTGCACTTGGTACTGCG 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353120606539152