Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20wallacei_20[genbank_20GCA_5F900068815.1_202017-04-27] 632,176 sequences; 365,010,054 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq422991 147 5e-30 seq26979 141 2e-28 seq26980 136 9e-27 seq78339 129 1e-24 seq78338 123 6e-23 seq26981 123 6e-23 seq78340 111 4e-19 >seq422991 Length=614 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || ||||| ||||||||| ||| || Sbjct 240 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTCTGAT 181 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| || || || ||||||||| Sbjct 180 ACTATAGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 121 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || |||||||| ||||||||| | || | | || || ||| | Sbjct 120 CGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGACGTACATTGTCTGACTACAACATT 61 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| ||| | |||||||| Sbjct 60 CAAAAGGAATCCACATTACATCTTGT 35 >seq26979 Length=899 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||||||||| || | || |||||| || || Sbjct 82 CAAATTTTTGTAAAAACACTGACTGGAAAAACGATTACTTTAGAAGTGGAAGCTTCTGAT 141 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| ||||| ||||| || ||||| || || ||| Sbjct 142 ACAATTGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 201 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| ||||| || || ||||||||| | || || | |||||||| || Sbjct 202 AGACTGATTTTCGCTGGAAAGCAACTGGAAGATGGACGCACACTGTCAGATTATAATATC 261 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| ||||| || |||| | || ||| | || || Sbjct 262 CAAAAGGAATCTACTTTGCACTTAGTGTTGCGTCTAAG 299 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || || || ||||| || || || || ||| Sbjct 538 CAAATTTTTGTTAAAACACTTACTGGCAAGACTATTACCCTTGAAGTTGAGCCTTCTGAC 597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || || || || || || || ||||| || Sbjct 598 ACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAACAG 657 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || || ||||| || ||||||||| | ||| | | || || || | Sbjct 658 AGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGACGCACTTTGTCAGACTACAATATT 717 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || |||| |||| Sbjct 718 CAAAAAGAATCTACCTTGCA-CTTG 741 >seq26980 Length=2195 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| ||||| | || || ||| || || Sbjct 961 CAAATTTTCGTAAAAACCTTAACTGGGAAAACCATCACATTGGAAGTAGAAGCTTCTGAT 1020 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||||||| ||||| ||||| || ||||| || || || Sbjct 1021 ACAATCGAGAACGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAG 1080 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || |||||||| |||| || | || ||||| || Sbjct 1081 AGACTAATTTTCGCCGGAAAGCAACTGGAAGATGGGCGGACACTATCGGACTATAATATC 1140 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || ||||| || |||| | || || | ||||| Sbjct 1141 CAGAAGGAATCTACTTTGCACTTAGTGCTGCGTCTCAG 1178 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || || || ||||| || || | || |||||| || ||| Sbjct 1873 CAAATTTTTGTGAAGACACTTACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCTGAC 1932 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 1933 ACAATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAA 1992 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| || ||||||||| | || || |||| ||||| | Sbjct 1993 AGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTCTCCGACTATAATATA 2052 Query 178104 CAAAAAGAATCAAC 178117 ||||| ||||| || Sbjct 2053 CAAAAGGAATCTAC 2066 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| ||||| | || || ||| || || Sbjct 1417 CAAATTTTTGTAAAGACATTGACTGGCAAAACCATCACATTGGAAGTAGAAGCTTCTGAT 1476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||| ||||| ||||||||||| |||||||| ||||| || Sbjct 1477 ACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCTGACCAACAG 1536 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || ||||||||||| ||||||||| | || || | |||||||| | Sbjct 1537 AGGCTAATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAATATT 1596 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || |||||||| |||| Sbjct 1597 CAGAAGGAATCAACCTTGCA 1616 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || || || ||||| || || || || || || Sbjct 1189 CAAATTTTCGTGAAGACACTGACTGGCAAGACTATCACTCTAGAAGTTGAGCCTTCTGAT 1248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 1249 ACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAA 1308 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||||| || || ||||| ||||| ||||||||| | || || Sbjct 1309 AGACTTATTTTTGCAGGAAAGCAGCTTGAAGATGGACGCACACT 1352 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| || || || || || || Sbjct 1645 CAAATTTTTGTAAAGACACTAACTGGCAAAACTATCACACTGGAAGTTGAGCCTTCTGAT 1704 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||||||||| || || || || || || || |||||| Sbjct 1705 ACAATTGAAAATGTTAAAGCGAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAGCAA 1764 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || ||||| || || ||||||||| | || || | || || || | Sbjct 1765 AGACTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGCACACTGTCAGACTACAATATT 1824 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 1825 CAGAAAGAATCTAC 1838 >seq78339 Length=2434 Score = 129 bits (142), Expect = 1e-24 Identities = 164/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| ||||| || ||||| || || | || || ||| Sbjct 1278 AAAATGC---AGATTTTCGTGAAAACACTCACGGGTAAAACCATTACTTTGGAAGTTGAA 1334 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| ||||| || || ||| || ||||| ||||| ||||| || ||||| Sbjct 1335 CCTTCCGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCTCCA 1394 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || || ||||| || | ||||| || | |||||| |||| Sbjct 1395 GATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGAC 1454 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||| | ||||||||||| || || || | || ||| | ||| Sbjct 1455 TACAACATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTC 1499 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| |||||||| || || | || || ||| ||| ||| Sbjct 1740 CAAATCTTTGTTAAAACACTCACTGGAAAAACTATTACGTTAGAAGTTGAAGCCTCTGAC 1799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||||||||| || ||||| || || ||| Sbjct 1800 ACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAA 1859 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || || | |||||||| | || || | || || || | Sbjct 1860 CGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAATATT 1919 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||||| ||| | || || | || ||| Sbjct 1920 CAAAAAGAATCGACACTTCATTTGGTACTGCGTCTGAGA 1958 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || |||||||| ||||| | || || || || ||| Sbjct 1512 CAGATCTTTGTTAAGACTCTTACTGGAAAAACCATCACGTTAGAAGTAGAGCCTTCTGAC 1571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||| || ||||||||||| || || || ||||| || Sbjct 1572 ACAATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCAACAG 1631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || ||||| || | |||||||| | || | | |||||||| | Sbjct 1632 AGGCTCATTTTTGCTGGAAAGCAATTGGAAGATGGCCGTACATTATCTGATTATAATATT 1691 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 1692 CAAAAGGAATCTACTCTACATTTAGTATTG 1721 >seq78338 Length=1389 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || ||||| || || ||||| || ||||| ||| ||| Sbjct 31 CAGATTTTTGTTAAAACCCTAACTGGAAAGACTATTACCCTGGAAGTGGAGCCCTCTGAC 90 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| ||||| || || || ||| Sbjct 91 ACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATCCCACCTGATCAACAA 150 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || || | |||||||| | || || | || || || | Sbjct 151 CGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAATATT 210 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| ||||| ||| Sbjct 211 CAAAAAGAATCCACACTTCAT 231 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| || ||| | || || || || || Sbjct 487 CAAATATTTGTCAAAACACTTACTGGCAAAACAATAACCTTGGAAGTTGAGCCATCTGAT 546 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| |||||||||||||| ||||| || || ||| Sbjct 547 ACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAA 606 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | ||||| | || || || || Sbjct 607 CGTCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTGTCTGACTACAATATC 666 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || ||||| |||| Sbjct 667 CAGAAAGAGTCCACCCTGCA-CTTG 690 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| | || ||||| || ||| Sbjct 943 CAGATCTTTGTTAAGACACTTACTGGGAAGACCATCACATTGGAAGTGGAGCCATCCGAC 1002 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || ||||| || || || || || ||||| || Sbjct 1003 ACCATCGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAG 1062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||| | || ||||| | ||||| | || || ||| || Sbjct 1063 CGTCTTATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAACATC 1122 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || ||||| | ||| Sbjct 1123 CAAAAAGAATCTACTTTGCATTTAGTT 1149 >seq26981 Length=233 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||| || || | || || ||| ||| ||| Sbjct 13 CAAATCTTTGTCAAAACACTTACTGGAAAAACAATTACATTAGAAGTTGAAGCCTCTGAC 72 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||||||||| || ||||| || || ||| Sbjct 73 ACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAACAA 132 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || || | ||||||||| | || ||| | || || || | Sbjct 133 CGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGACGTACACTTTCTGACTACAATATT 192 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||||||||| || ||||| Sbjct 193 CAAAAAGAATCTACTTTGCAT 213 >seq78340 Length=230 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||| || || | || || ||| ||| ||| Sbjct 10 CAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACATTAGAAGTTGAAGCCTCTGAC 69 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| || |||||||| || ||||| || || ||| Sbjct 70 ACAATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCAGATCAACAA 129 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || || || | |||||||| | || ||| | || || || | Sbjct 130 CGTCTTATTTTCGCAGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAATATT 189 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 190 CAAAAAGAATCTAC 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1193981272194144