Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq42954 491 5e-134 seq188143 89.7 6e-13 seq181590 86.0 7e-12 >seq42954 Length=2876 Score = 491 bits (544), Expect = 5e-134 Identities = 1095/1622 (68%), Gaps = 45/1622 (3%) Strand=Plus/Plus Query 52790 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 52849 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 522 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 581 Query 52850 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAA 52909 |||||||| ||||||| ||| | |||| ||| ||||| || |||||||| | Sbjct 582 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 641 Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 642 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 701 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 53028 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 702 TCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 761 Query 53029 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATAGATCCACCATCTACCATAATCCT 53085 ||| || |||| || | ||| | ||| || ||||||||| | ||||| Sbjct 762 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 820 Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 53144 ||| || || || |||| |||||| | |||| || ||| | | || ||||| | | Sbjct 821 ATTTTTCATATCTTCATCCCATAA-ATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGT 879 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 880 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 939 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | ||| ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 940 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 999 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 ||| | ||| | | ||| ||||| || || || ||||| || ||| | ||| Sbjct 1000 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCA 1057 Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 53381 ||| || | || || || ||||| | || || | || Sbjct 1058 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC- 1116 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 |||| |||||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1117 TTCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1176 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 1177 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1236 Query 53502 ATGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 | || || | | | | | ||| | ||||| | || |||||||||||||||| ||| Sbjct 1237 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGACAGGA 1295 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1296 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1355 Query 53621 TTATTGAGGTTTCTG----ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 || || | ||||| ||||| ||| | | || || | ||| ||||| ||| Sbjct 1356 TTGTTTA-AATTCTGAGTCACAAT--CTTAG-TGATTTCTTTTAATTTTTTAAAATTAAA 1411 Query 53677 TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 | | || | ||||||||||| | ||| || || || || || || || || || || Sbjct 1412 TCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 1471 Query 53737 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 || | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1472 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 1528 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 | ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||| Sbjct 1529 AAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATACAACATATATGGTGTACC 1588 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT 53913 ||| || | || | ||||||||| | ||||| | | |||| | | | | ||| Sbjct 1589 AGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTCGTTTT 1646 Query 53914 GT--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACA 53971 | | | |||||| ||| ||| | ||| | | ||| || || ||||| || Sbjct 1647 ATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCCGTAACAG 1706 Query 53972 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---C 54028 | | | |||||||| |||| |||||||| | ||| ||| |||||||| Sbjct 1707 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCT 1763 Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| | Sbjct 1764 ACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATT 1823 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 || || || ||||| |||||||| | ||| | |||| | | || || | |||||| || Sbjct 1824 TCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGC 1883 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 || ||||| || | | | || || ||||||||||| || ||||||| ||||| || Sbjct 1884 TCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCA 1943 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 || || || || |||||||||||||| | | |||||| || | ||||| || || | Sbjct 1944 GTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCT 2003 Query 54269 ATATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 ||||| || ||| | ||| || || || || |||||| || || || | Sbjct 2004 ATATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGAT 2060 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 ||||| |||||||| ||| ||||||| ||||| | || || || |||||||| || || Sbjct 2061 TTAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTC 2120 Query 54386 AT 54387 || Sbjct 2121 AT 2122 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| |||||||| |||| ||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2583 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2642 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2643 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2693 >seq188143 Length=771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||||| || |||||||| | |||||||| ||||| || || ||||| ||||| | | Sbjct 481 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTGTACATCTGC 540 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 || ||||| ||||||||||||| || ||||| |||| Sbjct 541 CATATGTCTGGATATTGAATTGGGAATATAACGAATC 577 >seq181590 Length=632 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 603 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 544 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||| || ||| ||||| ||||| || | ||| | || | || | ||| Sbjct 543 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 484 Query 54899 GTTACTCCATTATATATTCC 54918 ||||| ||| |||||| || Sbjct 483 GTTACACCAGAATATATGCC 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591819115612560