Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq15400 228 7e-55 seq6456 113 4e-20 seq72952 102 7e-17 >seq15400 Length=3181 Score = 228 bits (252), Expect = 7e-55 Identities = 444/647 (69%), Gaps = 29/647 (4%) Strand=Plus/Plus Query 105997 GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056 |||||||| ||||| || || ||||||||||||||||| |||||||| || ||||||||| Sbjct 870 GGGTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTC 929 Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGT-TTCT------TTTTTCAAC 106109 || | | ||||| ||||| || || | ||||| ||| |||| ||| ||||| Sbjct 930 CATGTTAGGAGAAACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAAC 988 Query 106110 ATCGTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTT 106169 | ||| | || || || | || ||||| || || || || |||||||| || Sbjct 989 T------AAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTT 1042 Query 106170 TAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTC 106229 || | ||| ||| |||| | ||| || || ||||| |||||||| || ||||| Sbjct 1043 CAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTC 1102 Query 106230 GTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGC 106289 |||||| | |||| |||||||| |||||||||| || ||||| |||||||| || | Sbjct 1103 GTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGA 1162 Query 106290 AACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTAT 106349 |||||||| || || || || | || || | ||||| | || || || || || Sbjct 1163 GACTTTGAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGAT 1222 Query 106350 CGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAA 106409 | ||| | | ||| ||||| || || |||||||| ||||| || || ||||| | ||| Sbjct 1223 CTCTTTTAAGCTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAA 1282 Query 106410 GTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCA 106469 || | | ||| || | || | || ||||| || || | || |||||||| Sbjct 1283 ATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCA 1342 Query 106470 CTCAACAAAGTACGCAGCGACAATTTTATCC---TCTCT-CCTGCCAGGTTTGTTGTTTT 106525 || || ||||| || | |||| ||| ||| | | | | || ||||| || |||| Sbjct 1343 TTCTACGAAGTAGGCGCCCACAACTTT-TCCAGATGTTTGCTTGAATGGTTTATTTTTTT 1401 Query 106526 CCAGCCATGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCGACTTTGACCA 106585 | | |||| ||||| || || | | ||| | || || || || || || ||| | Sbjct 1402 CTCCCAATGTATATTCCAGAGGAGGTAAATGACTTCCATCAGTATCGGCCAC---GACAA 1458 Query 106586 ACAC---GGGATCGCT--CACGGAACAGCCGTCCTCATTGCAAAGTT 106627 | ||||||||| || | |||||||| ||||||||||||| Sbjct 1459 TTTCGGTGGGATCGCTTGAACTG--CAGCCGTCTTCATTGCAAAGTT 1503 >seq6456 Length=2491 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 2352 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 2293 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| |||||||| || | ||| |||||| Sbjct 2292 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 2233 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||| ||||| || || || || |||||| | | ||||| | || ||| Sbjct 2232 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTAT--CTGACTAC 2175 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||||||||||||| | ||| |||| |||| Sbjct 2174 AATATTCAGAAGGAATCTACTTTGCACCTGGTACTACG 2137 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| |||||||| ||||| ||| |||| | | Sbjct 2124 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACAATTACATTAGAAGTGGAAGCTTC 2065 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| || |||||||| | || || || Sbjct 2064 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGGATTCCTCCCGACCA 2005 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||| ||||| || ||||| || |||||| || || | ||||| || Sbjct 2004 ACAGAGGCTTATTTTTGCAGGGAAACAGCTAGAAGATGGTCGTACGCTGTCAGATTATAA 1945 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||||||| ||| | ||| ||||||| || Sbjct 1944 TATTCAGAAGGAATCAACTTTGCACTTGGTGTTGCG 1909 Score = 102 bits (112), Expect = 7e-17 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| |||| |||||||| || || ||| ||| | | Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| || |||||||| | ||| ||| || Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTAC 29138 ||| || | || ||||| || || ||||| |||||| | || | ||| | |||||| Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTAT--CTGATTAC 807 Query 29139 AATATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| ||||||||||| ||| Sbjct 806 AATATTCAGAAAGAATCTACTCTCCAC 780 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| |||| |||||||| ||||| ||| |||| | | Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| ||| ||||||||||| | || || ||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||| ||||| || |||||||| |||||| || || | || || ||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAAT 1488 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || || ||||||||| | ||| | ||||| || Sbjct 1487 ATACAAAAAGAATCTACTTTGCACTTAGTGTTGCG 1453 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| |||||||| || | ||| |||||| Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 1777 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||||| ||||| || || || || |||||| || || | || ||||| Sbjct 1776 GCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAA 1717 Query 29141 TATTCAGAAGGAATCTAC 29158 |||||||||||||||||| Sbjct 1716 TATTCAGAAGGAATCTAC 1699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||| | || ||||| || ||||| ||| || || | Sbjct 1212 AATGCAAATTTTTGTGAAAACACTTACCGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 1153 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||||||| ||||| ||||| | ||| ||| || Sbjct 1152 TGATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGGATTCCCCCAGACCA 1093 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||| ||||| || |||||||| |||||| || || | || ||||| Sbjct 1092 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 1033 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||||||||| | ||| |||| || || | |||| || Sbjct 1032 TATTCAAAAGGAATCTACCTTGCACTTGGTACTAAGACTGAGAGGTGG 985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | |||||| |||| |||||||| || || ||| |||| | | Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| || || ||||| | || ||| || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || || || || || |||||||| | |||||| ||| || | ||||| || Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAA 1261 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||| |||||||||||| | ||| | || || || Sbjct 1260 TATTCAAAAGGAATCTACTTTGCACTTAGTTTTGCG 1225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || || ||||| || ||||| ||||| || ||||| || ||| Sbjct 2486 GACAAAGAAGGTATTCCTCCCGACCAACAGAGGCTTATTTTTGCAGGAAAACAGCTAGAA 2427 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | ||| | | ||||| ||||||||||||||||| ||| | ||| |||||| Sbjct 2426 GATGGTCGTACACTGT--CAGATTATAATATTCAGAAGGAATCAACTTTGCACTTGGTGT 2369 Query 29173 TACG 29176 | || Sbjct 2368 TGCG 2365 >seq72952 Length=1956 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || ||||| ||||| ||| ||| || | Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || |||||||| | || ||||||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | || |||||||| || || ||| |||||||| || | |||| | || |||| Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTAT--CTGACTACA 1069 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||| || ||||| || |||||| |||| | || || |||||||| Sbjct 1068 ATATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | |||||||| || || || ||||||||| ||| ||||| | Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||| ||||| ||||| | ||| ||| ||| Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCAA 671 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || ||||| || || ||| |||||||| ||| || | ||||||||| Sbjct 670 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 611 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || || || |||||| |||| | || | |||||||| Sbjct 610 ATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 564 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | ||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 1381 GACAAAGAAGGTATTCCCCCAGACCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 1322 Query 29115 GATTCCA--AAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | | ||||| | ||||| |||||||| |||||||||||||| || Sbjct 1321 GATGGCCGTACACTAT--CTGATTATAATATTCAAAAGGAATCTACTCTACA 1272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| | || || || |||||||| ||| ||||||| | Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||| || | || ||||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || || ||| |||||||| ||| | | |||||||| Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || ||||||||||||||| |||| ||||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTACG 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426997780220285