Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq15400 219 3e-52 seq72952 111 1e-19 seq6456 100 2e-16 >seq15400 Length=3181 Score = 219 bits (242), Expect = 3e-52 Identities = 439/642 (68%), Gaps = 19/642 (3%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 |||||||| ||||| || || ||||| |||||||||| || |||||||| || |||||| Sbjct 870 GGGTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTC 929 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGT-TTCTTTTTTCAACGTCGTG 97882 || | | | ||| ||||| || |||| ||||| ||| |||| || ||| Sbjct 930 CATGTTAGGAGAAACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAAC 988 Query 97883 CATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATG 97942 | || |||| || || | || ||||| || || || || |||||||| || | | Sbjct 989 TAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTC 1048 Query 97943 TGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCA 98002 ||| ||| ||| | ||| ||||| ||||| ||||||||||| || |||||||| Sbjct 1049 AGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 1108 Query 98003 AGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTT 98062 | |||| || ||||| |||||||||| || ||||| ||||||||||| | ||||| Sbjct 1109 TGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTT 1168 Query 98063 GAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTT 98122 ||| || || || || || || || |||||||| |||| ||||| || || ||| Sbjct 1169 GAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTT 1228 Query 98123 GAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGA 98182 | | ||| ||||| || || || ||||| ||||| || || || || | ||| || | Sbjct 1229 TAAGCTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGT 1288 Query 98183 TAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGAC 98242 | ||| || | || | || ||||| || | | || |||||||| || || Sbjct 1289 AAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTAC 1348 Query 98243 AAAGTACGCAGCGACAATTTTATCC---TCTCTTC-TGCCGGGTTTGTTGTTTTCCAGCC 98298 ||||| || | |||| ||| ||| | | | | || ||||| || ||||| | Sbjct 1349 GAAGTAGGCGCCCACAACTTT-TCCAGATGTTTGCTTGAATGGTTTATTTTTTTCTCCCA 1407 Query 98299 ATGTGTATTCGAGCGGCGCCAGATGACCGCCGTCGGTGTCTGCGATTTTGACCAACAC-- 98356 |||| ||||| || || | | ||||| || || || || || | ||| | | Sbjct 1408 ATGTATATTCCAGAGGAGGTAAATGACTTCCATCAGTATCGGCCA---CGACAATTTCGG 1464 Query 98357 -GGGATCGCTTATGGAA---CAGCCGTCCTCATTGCAAAGTT 98394 |||||||||| ||| |||||||| ||||||||||||| Sbjct 1465 TGGGATCGCTT---GAACTGCAGCCGTCTTCATTGCAAAGTT 1503 >seq72952 Length=1956 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| | || || ||||| ||||| ||| ||| || | Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || |||||||| | || ||||||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | || |||||||| || || |||||||||||| || | |||| | || |||| Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTAT--CTGACTACA 1069 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||| ||||| || |||||| |||| | || || |||||||| Sbjct 1068 ATATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | |||||||| || || || ||||||||| ||| ||||| | Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| ||||| ||||| | ||| ||| ||| Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCAA 671 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || || ||||| || || |||||||||||| ||| || | ||||||||| Sbjct 670 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 611 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || || || || |||||| |||| | || | |||||||| Sbjct 610 ATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 564 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | ||| ||| ||||| || ||||| ||||| || |||||| ||||| Sbjct 1381 GACAAAGAAGGTATTCCCCCAGACCAACAGAGGCTTATTTTTGCTGGAAAACAACTGGAA 1322 Query 25188 GATTCCA--AAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | | ||||| | ||||| ||||||||||||||||||||||| || Sbjct 1321 GATGGCCGTACACTAT--CTGATTATAATATTCAAAAGGAATCTACTCTACA 1272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| | || || || |||||||| ||| ||||||| | Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| || ||||| || | || ||||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | ||||||||||| || || |||||||||||| ||| | | |||||||| Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| ||||||||||||||| |||| ||||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTACG 1488 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| | || || ||||| ||||| ||| ||| || | Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||||| || |||||||| | || ||||||| Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | ||||| || |||||||| |||||||||||| || | ||| | | || |||| Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTT--CTGACTACA 1753 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | || ||||| ||||||||| | || | || | || ||| |||| || Sbjct 1752 ACATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGG 1704 >seq6456 Length=2491 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 2352 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 2293 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||||||| |||||||| || | ||| |||||| Sbjct 2292 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 2233 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||||||||||| ||||| || || || | |||||| | | ||||| | || ||| Sbjct 2232 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTAT--CTGACTAC 2175 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||||||| | ||| |||| |||| Sbjct 2174 AATATTCAGAAGGAATCTACTTTGCACCTGGTACTACG 2137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | |||||| |||| |||||||| || || ||| |||| | | Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||||||| || || ||||| | || ||| || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || || || || || |||||||| || |||||| ||| || | ||||| || Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAA 1261 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||||||||||| | ||| | || || || Sbjct 1260 TATTCAAAAGGAATCTACTTTGCACTTAGTTTTGCG 1225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| |||| |||||||| ||||| ||| |||| | | Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| ||| ||| ||||||||||| | || || ||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||| ||||| || |||||| | |||||| || || | || || ||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAAT 1488 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||| ||||||||| | ||| | ||||| || Sbjct 1487 ATACAAAAAGAATCTACTTTGCACTTAGTGTTGCG 1453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | |||||| | || ||||| || ||||| ||| || || | Sbjct 1212 AATGCAAATTTTTGTGAAAACACTTACCGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 1153 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || ||||||| ||||| ||||| | ||| ||| || Sbjct 1152 TGATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGGATTCCCCCAGACCA 1093 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || ||||| ||||| || |||||| | |||||| || || | || ||||| Sbjct 1092 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 1033 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||| | ||| |||| || || | |||| || Sbjct 1032 TATTCAAAAGGAATCTACCTTGCACTTGGTACTAAGACTGAGAGGTGG 985 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| |||| |||||||| || || ||| ||| | | Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||||||| || |||||||| | ||| ||| || Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTAC 25211 ||| || | || ||||| || || ||| | |||||| | || | ||| | |||||| Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTAT--CTGATTAC 807 Query 25212 AATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||| || ||||||||||| ||| Sbjct 806 AATATTCAGAAAGAATCTACTCTCCAC 780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||||||| |||||||| || | ||| |||||| Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 1777 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||||| ||||| || || || | |||||| || || | || ||||| Sbjct 1776 GCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAA 1717 Query 25214 TATTCAAAAGGAATCTAC 25231 |||||| ||||||||||| Sbjct 1716 TATTCAGAAGGAATCTAC 1699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409513376698658