Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15400 178 1e-39 seq72952 122 8e-23 seq6456 118 9e-22 >seq15400 Length=3181 Score = 178 bits (196), Expect = 1e-39 Identities = 349/510 (68%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| || |||||||| || || | || | |||||||| || Sbjct 1369 AAAGTTGTGGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 1310 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | ||| | || || ||||| | || || ||||| || Sbjct 1309 CGTATACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGT 1250 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 |||||||| || ||| ||||| | | |||||||| | ||| ||||||| || Sbjct 1249 GACGGCATAAATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCC 1190 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | || ||||| || | || |||||||| ||||| ||| ||||||| Sbjct 1189 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 1130 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || ||||| || | || ||||||||||| || ||||||||||||||||| ||| | ||| Sbjct 1129 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 1070 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTC 21926 || | || ||| ||| | ||| ||| | ||| | ||||| || || ||||| | Sbjct 1069 TCACTAAAACAAGCCCGCCCTGA-ATTGAAGATTCTTC-CCTCGATTGGTGGGTGGACGC 1012 Query 21927 TGTCCGATCCATT----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGAT 21982 | ||||||| || || | | || || | | | | ||| ||| | | Sbjct 1011 TTGCCGATCCTTTCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAG 956 Query 21983 TCAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAG 22042 ||||| | || ||||| || || ||||| |||| || || || | |||||||||||| Sbjct 955 TCAGTAAAGGAGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAG 896 Query 22043 TTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 ||||| || || || || || ||||| ||| Sbjct 895 TTTCCTGGTGGTAAAGGTGCTAACCCTGAC 866 >seq72952 Length=1956 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || |||||||| | ||||| |||||||||||||||||||| | |||||| ||| Sbjct 1491 AATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGACCATCT 1550 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| |||| |||||||||||||| || || |||||||| |||||| Sbjct 1551 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 1610 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | ||| | || || | | || || || | || | || Sbjct 1611 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCTAGAGTAATGGTC 1670 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| |||||||||||||| Sbjct 1671 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || || | || |||| ||| | || || ||||||||||| ||||| || Sbjct 1018 TACCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAG 1077 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || | || || ||||| |||||||||| || ||||| |||| Sbjct 1078 ATAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAG 1137 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| |||||| || || | ||| | ||||| | | || | Sbjct 1138 GAATGCCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTA 1197 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 1198 CTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || || |||||||| || |||||| ||| || Sbjct 582 ACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCC 641 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 | || || ||||| | ||||||||||| || || || || ||||| ||||| | |||| Sbjct 642 AATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGT 701 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| || || | |||| ||||| | || | || || || | ||| | || | Sbjct 702 -ATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGT-TCTACTTCCAGGGTAATGGTCT 759 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | ||||| ||||| || ||||| Sbjct 760 TTCCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || || || | ||||| || |||||||| || ||||| Sbjct 1246 TACCACCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAG 1305 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| || ||| || || ||||||||||| | || || | ||| || || || Sbjct 1306 --ATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGG 1363 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 || || || || |||||| || ||| || || | ||| | ||||| | || | | Sbjct 1364 GGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCAGATGGT-T 1422 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 1423 CTACCTCTAGGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 >seq6456 Length=2491 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | ||||| || |||||||| || ||||| || |||||| ||| Sbjct 1227 CAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGACAGAGTGCGTCCATC 1286 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| || ||| | || || | ||| || || ||||| ||||| |||||||| Sbjct 1287 TTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTC 1346 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCG 118704 ||||||| ||||| | ||| | || || | ||| || || || | || | | Sbjct 1347 CTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAATGTGATAG 1405 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||||| |||||||||||||| ||||| Sbjct 1406 TTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || || || || ||||| || ||||| || || || ||| Sbjct 1911 CAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACCATC 1970 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || || | ||| || |||||||| || || || ||||| Sbjct 1971 TTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTTGTC 2030 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||||||| ||||| | ||| | || || | ||| || || || | || | | Sbjct 2031 TTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACTTCTAATGTAATTG 2089 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||||| || ||||||||||| ||||| Sbjct 2090 TTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| || || ||||| ||||| || | | |||| ||| ||| |||||||| |||| Sbjct 1699 GTAGATTCCTTCTGAATATTGTAGTC--TGACAGTGTACGTCCATCTTCGAGCTGCTTTC 1756 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || |||||||| || || ||||||| | Sbjct 1757 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTTGCCT 1816 Query 118660 TAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 |||| | ||| | || || | ||| || || || | || | || ||||| ||||| Sbjct 1817 TAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAGTGTGATAGTCTTGCCAGTCAGT 1875 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| Sbjct 1876 GTCTTTACAAAAATTTGCAT 1895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||| ||| | ||||| || || ||||| ||||| || |||||| ||| ||| | Sbjct 2143 ACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG--ATAGTGTACGTCCATCTT 2200 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| |||||||| | || || | |||||||| || || |||||||| || || Sbjct 2201 CAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCT 2260 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTT 118706 ||||||| ||||| | ||| | || || | ||| || || || | || | || Sbjct 2261 GAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAGTGTGATAGTC 2319 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||||||||| ||||| Sbjct 2320 TTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432475014456124