Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15400 242 4e-59 seq72952 125 8e-24 seq6456 123 3e-23 seq3672 100 3e-16 seq49548 82.4 9e-11 >seq15400 Length=3181 Score = 242 bits (268), Expect = 4e-59 Identities = 646/981 (66%), Gaps = 21/981 (2%) Strand=Plus/Minus Query 96454 AAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGAC 96513 ||||| ||| || || || ||||||||||| || || | | || || |||| ||| Sbjct 1369 AAAGTTGTGGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 1310 Query 96514 AAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGC 96573 | || || || ||||| || ||| | | || || ||||| ||||||||||| || Sbjct 1309 CGTATACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGT 1250 Query 96574 GACGGTATCAACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCA 96633 ||||| || || ||||| ||||| || | ||| ||| | || | ||| || Sbjct 1249 GACGGCATAAATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCC 1190 Query 96634 TGTGCCGGCAGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAA 96693 ||| |||| | || || ||||| || |||||||| | | || |||||||| Sbjct 1189 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 1130 Query 96694 CCGCAAAAAGGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATG 96753 || |||||||| | || || || || || ||| ||||| |||||||| | ||| Sbjct 1129 CCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG 1070 Query 96754 GCTATTCGCAAACATAA-----CCCTCATTTAAAAATT-TTGCCTAGCATCGGTGGTTGG 96807 || | || | || |||| | || || ||| || ||| | || ||||| ||| Sbjct 1069 -----TCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCG-ATTGGTGGGTGG 1016 Query 96808 ACACTGAGCGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGAC 96867 || || ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | Sbjct 1015 ACGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG 956 Query 96868 TCGGTTCGTGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAG 96927 || || || || | | | ||||| || |||||||| ||||| ||||| |||||| Sbjct 955 TCAGTAAAGGAGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAG 896 Query 96928 TTTCCCGGCGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACA 96987 ||||| || || || ||||| ||||| ||| | || | || | | ||||| | Sbjct 895 TTTCCTGGTGGTAAAGGTGCTAACCCTGACCTCGG-TAGCCCA--GAAGATGGTGATTGT 839 Query 96988 TATGTAACACTATTGAAAGAACTACGCCTAATGCTAGACAAACTGGGTGTGGTGAACAAA 97047 ||||||| | |||||||| |||| ||||| || | || | | || || Sbjct 838 TATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCT---TTCAGCTAAGAAT 782 Query 97048 CGCGTG---TACGAGTTGACCAGCGCCGTGGGAGCAGGCTACGATAAAATAGACGTGATA 97104 || | ||||||||||| || | | | || | |||||||| | || | Sbjct 781 GGCAAGAAATACGAGTTGACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTT 722 Query 97105 GATTACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTCAAA 97164 || ||| |||| | ||| |||||||| | || || |||||||| ||||||||| Sbjct 721 GACTACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAA 662 Query 97165 GGCGCATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGGAAC 97224 || || ||||| || | | || |||||||||||||||||||| ||| | ||||| Sbjct 661 GGAGCCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAAT 602 Query 97225 CCTGACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTCAAGCAAAAAGTACCT 97284 || | || | |||||| |||||| | |||||| | || | || ||| | Sbjct 601 CCCAAGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAAT 542 Query 97285 TCCAACAAAATTGTAGTTGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCACGAT 97344 | || || |||||| | || || |||||||| || | || |||| ||| || || ||| Sbjct 541 CCTAAGAAGATTGTATTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGAT 482 Query 97345 TACAAGAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATGGGAA 97404 ||| | |||| | || || ||| ||| || || || || |||||||| ||| || Sbjct 481 TACGAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAA 422 Query 97405 AACGGTGTCGTCGATTATAGG 97425 |||| || || || || ||| Sbjct 421 GACGGAGTGGTTGACTACAGG 401 >seq72952 Length=1956 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||| ||| || ||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 336 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 395 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||||||||||||||| || || || || || || | || Sbjct 396 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGGGA 455 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| || ||| | | | | ||||| | |||||| Sbjct 456 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCACT 515 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 516 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||| | ||||| || | ||| ||| || || ||||||||||||| | Sbjct 564 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 623 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || | ||||||||||| || ||||| ||||| ||||| | || Sbjct 624 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGA 683 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||||| || | || | | ||||| | ||| || Sbjct 684 ATGCCTTCCTTATCCTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACT 743 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || || |||| || || ||||| |||||||| Sbjct 744 TCCAGGGTAATGGTCTTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||| |||||||||| ||||| || | || || | ||||||||||| || Sbjct 1512 TCTTTTTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAG 1571 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || |||||||| || | || | || ||| ||||| |||||| ||| | | Sbjct 1572 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 1631 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || | |||||| || | || ||||| || || ||||| || || ||| Sbjct 1632 TCAATAGTATCAGAGGGTTCCACTTCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACA 1691 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 1692 AAAATCTGCAT 1702 >seq6456 Length=2491 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || |||| |||||| || || ||||| || |||||||||||||| ||||||| Sbjct 1212 TCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGA 1271 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || |||| ||| || || ||||| || || | ||| ||||| | || Sbjct 1272 CAGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGG 1331 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||||| ||| |||||| || | | | | || || | ||||| Sbjct 1332 AATGCCTTCCTTGTCC-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 1390 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| |||||||| || || || |||||||| ||||||||| Sbjct 1391 CTTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCATT 1440 Score = 105 bits (116), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | |||||||||||| ||||| || ||||| |||||||| ||||| | Sbjct 1896 TCCACCCCTAAGACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGA 1955 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || |||||||| || || || || || || | ||| ||||||| || Sbjct 1956 CAGCGTACGACCATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGG 2015 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||| | ||| |||||| || | | | | || || | ||||| Sbjct 2016 AATCCCTTCTTTGT-CTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 2074 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | || || |||||||| || || ||||||||||| ||||||||| Sbjct 2075 CTTCTAATGTAATTGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 2124 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| || ||||| || || ||||| ||||||||||| || | | Sbjct 1669 CCACCTCTCAGACGCAGAACTAAATGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGAC 1728 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || |||| ||||| || | || Sbjct 1729 AGTGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 1788 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||| || ||| ||| |||||| || | | | | || || | |||||| Sbjct 1789 ATGCCCTCTTTATCC-TGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCAC 1847 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| || ||||| || || ||||||||||| ||||||||| Sbjct 1848 TTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 1896 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | || | |||| ||||| || ||||| ||||||||||| |||| Sbjct 2124 TCCACCTCTCAGCCGTAGTACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGA 2183 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| ||||| || || |||| ||||| || | || Sbjct 2184 TAGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGG 2243 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||| || ||| ||| |||||| || | | | | || || | ||||| Sbjct 2244 AATGCCCTCTTTATCC-TGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 2302 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| || ||||| || || ||||||||||| ||||||||| Sbjct 2303 CTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 2352 >seq3672 Length=3751 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 353 TCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 412 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 413 ATACTACCGAGGA 425 >seq49548 Length=1598 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| || | ||||||||||||| ||||||| | |||||| |||| ||||| |||||||| Sbjct 503 TCCCCGACGGGGAATCGAACCCCGGTCTCCTGTGTGACATTCGGAGATACTTACCACTAT 444 Query 60127 ACTACCGAGGATT 60139 |||||| |||||| Sbjct 443 ACTACCTAGGATT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569985303421160