Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq91968 196 4e-45 seq15400 122 7e-23 seq6456 116 3e-21 >seq91968 Length=4039 Score = 196 bits (216), Expect = 4e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 |||||||||| | |||||||||| ||||||| | | || || || || |||||||||| Sbjct 629 ACTGGCCCCGCAGCATGAAGCAGAAACCCGAGGAACTCGCCGAGGCGGGATTCTTCTACA 570 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | || ||||| || ||||||||||| ||||||||||| | || || |||||| Sbjct 569 CCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGACTGGGAGA 510 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| |||||||||||||||| Sbjct 509 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGATGCGCCTACGTTCAGC 450 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 | || ||||| ||||||| || ||||| || |||||||| || |||| Sbjct 449 TGGTAAAGGGCCGAGACTATGTGCAGAAGGTGATCACGGAGGCGTGCG 402 >seq15400 Length=3181 Score = 122 bits (134), Expect = 7e-23 Identities = 330/500 (66%), Gaps = 10/500 (2%) Strand=Plus/Plus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || ||||||||||| || ||||| || || ||||| || ||||| Sbjct 872 GTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCA 931 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | ||| | | | || || Sbjct 932 TGTTAGGAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 987 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| |||||||||||| || || ||||| || || ||| | Sbjct 988 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATT 1047 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 1048 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1107 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 1108 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1167 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 |||| || || ||||| || || | ||||| |||| |||| || | | || | Sbjct 1168 TGAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCG-ATCTCT 1226 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || ||| ||| || | ||||| || ||||||||||| | ||| || || |||||||| Sbjct 1227 TTTAAGCTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGA 1286 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | ||||| || | || | || |||| || | || || |||||||| || Sbjct 1287 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCT 1346 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 1347 ACGAAGTAGGCGCCCACAAC 1366 >seq6456 Length=2491 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| | Sbjct 985 CCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 1044 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| || || || | || ||||||||| || || Sbjct 1045 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1104 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||||||| ||||| | | | || | ||| || Sbjct 1105 ATCCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACT 1164 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| |||||||| || || || |||||||| |||||||| Sbjct 1165 TCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCAT 1211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || ||||||||||| || || || ||| ||| | || Sbjct 1912 AACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACCATCT 1971 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || || | || ||||||||||||||| | || || ||||| Sbjct 1972 TCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTTGTCT 2031 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||||| |||||| | | | || | | ||||| || | ||||| || Sbjct 2032 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTAATTGTT 2091 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||| ||||| ||||| |||||||| Sbjct 2092 TTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | || ||||| ||||| || ||||||||||| |||||||| Sbjct 2125 CCACCTCTCAGCCGTAGTACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 2184 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || || || ||||| || || || | | || || || || || Sbjct 2185 AGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 2244 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| ||||||| |||||| | | | || | | ||||| Sbjct 2245 ATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 2304 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 2305 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393840894578287