Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq42954 511 6e-140 seq181590 95.1 2e-14 >seq42954 Length=2876 Score = 511 bits (566), Expect = 6e-140 Identities = 1105/1629 (68%), Gaps = 59/1629 (4%) Strand=Plus/Plus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 522 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 581 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 582 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 641 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 642 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 701 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCG 62266 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 702 TCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 761 Query 62267 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATCCT 62323 |||| | |||| || | ||| | |||| | || |||||| | ||||| Sbjct 762 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 820 Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGGT 62382 ||| || || || |||| |||||| | |||| || ||| | | || ||||| ||| Sbjct 821 ATTTTTCATATCTTCATCCCATAAATCAG-CTCGAGTCAAATCAGTCAGAAGATGATGGT 879 Query 62383 TAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62442 | ||||| | ||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 880 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 939 Query 62443 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 | | || ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 940 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 999 Query 62503 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCA 62560 ||| | ||| | | ||| ||||| || || || ||||| || ||| | ||| Sbjct 1000 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCA 1057 Query 62561 AAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGG 62613 ||| || | || | | ||| ||| || || ||||| | || | Sbjct 1058 AAGGTCTGTAGGAGTTTTGTTCCACATATC-------ATACTGGAGGATACCTTGGCTAG 1110 Query 62614 C-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | || |||| |||||| |||| ||||| || || |||| || |||||| || Sbjct 1111 CTGGACT-TCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCT 1169 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGG 62732 ||||||||||| |||||||| |||||||| || | | ||| || | ||||| | Sbjct 1170 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCA 1229 Query 62733 CTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 || || | || || | | | | | ||| | || || | || |||||||||||||| Sbjct 1230 CTTTCGTAAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACC 1288 Query 62792 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62851 || ||| | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| Sbjct 1289 GACAGGACGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATC 1348 Query 62852 TATAATTTTATTGAGATTTCTGA----CAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 || | ||| || | ||| |||| |||| ||| | | || || | ||| || Sbjct 1349 AATGACTTTGTTTAAATT-CTGAGTCACAAT--CTTAGTG-ATTTCTTTTAATTTTTTAA 1404 Query 62908 AATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 ||| |||||| || | ||||||||||| | ||| | || || || || ||||| | Sbjct 1405 AATTAAATCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTG 1464 Query 62968 CTACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || |||| | || | | ||||| | | ||||||||||||||| ||||| || | Sbjct 1465 CCACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAA 1521 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||||| |||||||||||| |||| || ||||||||||| | || ||| Sbjct 1522 TAGTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATACAACATATATG 1581 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 | |||||||| || | |||| ||||||||| | ||||| | || |||| | | | Sbjct 1582 GTGTACCAGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTC 1641 Query 63145 TAGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 | ||| || | ||| |||| || ||| | ||| | | |||||| || ||||| Sbjct 1642 --GTTTTATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCC 1699 Query 63203 CCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63262 || | | | | |||||| |||| |||||||| | ||| ||| ||||| Sbjct 1700 GTAACAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATC 1756 Query 63263 CTTCACT---CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 ||| || | ||||||||| ||||| || ||||| | ||| ||| || ||||| | Sbjct 1757 CTTTTCTACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGC 1816 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 ||| ||| || || ||||| |||||||| | ||| | |||| | | || || | ||| Sbjct 1817 TCTCATTTCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATG 1876 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || || ||||| || || | | || || ||||||||||| || ||||||| || Sbjct 1877 CCAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATA 1936 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 ||| || || || || || |||||||||||||| | | ||| ||||| | ||||| || Sbjct 1937 TCTGGCAGTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGT 1996 Query 63500 ACCGGAGATATAGCCTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCC 63556 || | ||||| || ||| | ||| || || || || |||||| || || Sbjct 1997 GCCAGCTATATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACC 2053 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 || |||||| |||||||| ||| ||||||| || || | || ||||| || ||||| Sbjct 2054 GGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATACTATC 2113 Query 63617 ATCGATCAT 63625 || |||| Sbjct 2114 GTCTTTCAT 2122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 2584 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 2643 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 2644 TTAAAATCTCTATCATAAACAAT 2666 >seq181590 Length=632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 603 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 544 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 543 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 484 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 483 GTTACACCAGAATATATGCC 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627799451846160