Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq42954 459 2e-124 seq188143 104 2e-17 seq12094 96.9 3e-15 >seq42954 Length=2876 Score = 459 bits (508), Expect = 2e-124 Identities = 1168/1762 (66%), Gaps = 29/1762 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| || Sbjct 549 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAAACCCATCTTC 608 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || ||||| | || |||| ||| | | || ||| | Sbjct 609 CAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAGGTTTAGCAACATGTATGTTA 668 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| |||||||| || ||||| || |||||||| | || | || || Sbjct 669 AAAGATTGACTTTGGTCTATAAATGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 725 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAAA 37041 | | || |||||||| || ||||| || | | | |||| | | || | | | | Sbjct 726 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTATTTCTTTAGGGATTTTTTCA 785 Query 37042 ---TGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATA 37098 | ||| ||||| ||||| | | | ||| ||| || || || | || ||| | | Sbjct 786 ATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTTCATATCTTCATCCCATAAA 845 Query 37099 TTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAAT 37158 | | | | || ||| || || | || || || |||| ||||||||||| Sbjct 846 TCAGCTCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAAG 905 Query 37159 ACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATA 37216 ||||||||| ||| |||| ||| | ||| ||||||||| || ||| | || | | | Sbjct 906 ACTCTTCTTTGGTAAATAT-TTGAT-GTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAA 963 Query 37217 TTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTG 37276 |||| | ||||| ||||| ||||| |||||||| | || ||| | ||| |||||| Sbjct 964 TTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTT 1023 Query 37277 TATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACA 37336 | || | | ||| || || |||| ||||| | ||||| || | || ||||| Sbjct 1024 TTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCAAAGGTCTGTAGGAGTTTTGTTCCACA 1083 Query 37337 TATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGT 37396 ||||||| || || ||||||| || |||||| | | |||||| || | || | Sbjct 1084 TATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTATGCACCTT 1143 Query 37397 AAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTT 37456 ||| |||| ||| ||||||| ||||| ||| ||||||| |||||||| || |||| Sbjct 1144 CTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTT 1203 Query 37457 GTATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCAATAATATAAACACA 37515 || ||| | | | |||||| || || ||| || | || | || || | ||| | Sbjct 1204 GTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAGGTAT-TCTCATCAACACAAATGTA 1262 Query 37516 TCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGAT 37575 || |||| |||||||||||| ||||| | || | || || |||| || | | | Sbjct 1263 TCTGCCATACCCTGAACACCAATACCGACAGGACGGTGCCTCATATTTGAAGTTTTTGCT 1322 Query 37576 TCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTC 37635 || || |||||| | || | ||| || | ||| |||| ||| | | | || || Sbjct 1323 TCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTCTGAGTCACAATCTTA 1382 Query 37636 GTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAA 37695 || ||| | | || || | || ||||| ||||| | |||||| | | | | Sbjct 1383 GTGATTTCTTTTAATTTTTTAAAATTAAATCGATTATTTTCAACAAACATGTTAAGTGCT 1442 Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 || || | || || || || || ||||||||||| | | |||| | || ||| || Sbjct 1443 ATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTG 1502 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || ||||| || || |||| || || | ||| ||||||| || | || |||| | Sbjct 1503 CAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCA 1562 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCAT 37875 || ||||| | ||||| || || || || | |||||| || ||||| || |||||| Sbjct 1563 TCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAATTGACTTCCAT 1622 Query 37876 AAACTTCTT--GCTTTAACGATCGCTTT----AAtttttttCTTTGTTTCGTATTCTATA 37929 || |||| ||| | || ||| ||| | |||||||| ||| |||| | Sbjct 1623 AA--CTCTTGAGCTCTGAC--TCGTTTTATAAACCGTTTTTCTT--CTTCATATTTGGCA 1676 Query 37930 TATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGACA 37988 ||| | | || ||| || || ||| || | || ||||| || ||||| Sbjct 1677 TAT-AGTGCTTCGAATTCCTCTCCGTAACAGTCAGCGAGGCCAGGACAATCATGAGGACA 1735 Query 37989 CATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAA 38048 ||| ||| ||| |||||||| |||||||| | || |||||| | ||| |||| |||||| Sbjct 1736 CATGAGACTCCAATCTTCATCCTTTTCTACCCTTTTCATAAACAGATCTGGTATCCATAA 1795 Query 38049 TGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG 38108 ||| ||| | ||| | | ||| |||||| || ||| |||||| |||| || Sbjct 1796 AGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTTTTTAAATCTAA 1855 Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 || || ||||| || || ||||| || |||| ||||| | | ||| || || | ||| Sbjct 1856 GAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTT 1915 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 | || || |||| | |||||| | || || || || | ||| ||||| || |||| Sbjct 1916 GTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTCTCAACATTGGCACTAG 1975 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT 38288 |||||| || || || | || | |||||||| |||| |||| || | | | Sbjct 1976 ACCATTTGAAACCCCATTAGTGCCAGCTATATAAGACCCCTGGGCTCTAATGCAATGTGT 2035 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 || ||||| ||||| ||| ||| || ||||| || ||||||||||| ||||| || Sbjct 2036 ATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCGAA 2095 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 |||||||| ||||| || || || || | || | || || || | || ||| Sbjct 2096 AATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAGGAGGAAAGCTGTGGCCG 2155 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 || || | || || | |||||| ||||||| | || |||| || |||| Sbjct 2156 CGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCAT 2215 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 |||||| || | ||| || ||| || || | || ||||| |||| || || ||||| Sbjct 2216 ATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCAT 2275 Query 38529 TAGCATATGTTGTGGTCTTTCT 38550 ||||| ||||| ||||||||| Sbjct 2276 AAGCATGTGTTGAGGTCTTTCT 2297 >seq188143 Length=771 Score = 104 bits (114), Expect = 2e-17 Identities = 137/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 || || ||||||| |||||||||||| |||||||| |||||||| || | || || | Sbjct 169 ATCTCCGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGT- 227 Query 11984 CACT-GTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 |||| | || || | || | ||| | || |||||||| |||||||||||| || Sbjct 228 CACTTGAACCTCTTGCGAGAAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGC 287 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCG---TCTTTAGTTAATTTATC 12099 ||||| ||||||| | |||||| ||||| | ||| ||| |||| ||||| | || Sbjct 288 CGCAAAGAATGCTAAGACATGTTTGATAAAATGTTTCTCGCAATCTT---TTAATGTCTC 344 Query 12100 CCAATC 12105 |||||| Sbjct 345 CCAATC 350 >seq12094 Length=2216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || ||||||||||||||||| ||||||||||| | ||||||||| Sbjct 416 ATAAGTTCATTGCTGAAAGTTAATCCGGGCATCAAGCCTCGTTTTTTCAACCAAAATATT 357 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || || ||||| || | | | |||| Sbjct 356 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCCGCAAAAGCGATAATACGTTCT 297 Query 11786 CCATAT 11791 ||| || Sbjct 296 CCAAAT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467023488413680