Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6456 100 2e-16 seq72952 93.3 3e-14 >seq6456 Length=2491 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||||| ||||| || | || |||||||| | |||||| || ||| Sbjct 985 CCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 1044 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | |||||| || |||||||| | | |||||| || | || Sbjct 1045 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1104 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || |||| || | ||| ||| || || ||| || Sbjct 1105 ATCCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACT 1164 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| || ||||| || ||||||||||||||||||||| Sbjct 1165 TCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCATT 1212 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | |||||| | || | |||| ||| || || || | ||||||||| || Sbjct 757 CCACCTCTCAGTCTGAGAACAAGGTGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAT 816 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || || | ||| || |||||||||||||| | |||||| || | || Sbjct 817 AATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGGGGA 876 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| || | || || | | | ||| || ||| || || Sbjct 877 ATGCCTTCTTTGTC-CTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTAC 935 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || || || |||||||| |||||||||||| Sbjct 936 TTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| ||||| |||| || ||| | || || || ||||||||||| ||| Sbjct 1249 TCCTTTTGAATATTATAATCAGACAGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAA 1308 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||| | |||||| || | || | ||||| || || ||| || | || || | Sbjct 1309 ATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTC-CTGAATTTTTGCCTTAACATT 1367 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||| || ||| || || || | || |||||||| || || || ||||| || Sbjct 1368 TTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTAC 1427 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 1428 AAAAATTTGCATT 1440 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||| || || | ||| || ||||| | ||| || || |||| ||| ||| | || Sbjct 1456 AACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGACAGTGTGCGTCCATCT 1515 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || |||||||| | | ||||| || | || | |||||||| || Sbjct 1516 TCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGAATGCCTTCTTTATC- 1574 Query 43018 CTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 |||| || | || || | | | |||||| ||| || || |||| || ||||| Sbjct 1575 CTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGT 1634 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || || ||||| |||||||||||||| Sbjct 1635 TTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 >seq72952 Length=1956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| || ||||| | ||||| || || | |||||| | || ||| Sbjct 1722 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCTTCC 1781 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 ||||| ||||| || ||||| | || |||||||| | || | |||||||| || | Sbjct 1782 AATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGG 1841 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | || || | ||| |||||| || || || |||| || || |||||| Sbjct 1842 ATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAATTGTTTTT 1901 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| |||||||||||||| Sbjct 1902 CCAGTAAGTGTTTTAACAAAAATTTGCAT 1930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| | | ||||| || | ||| ||| || || | ||||||||| ||| Sbjct 564 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 623 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||||||| || || |||||||| | |||||||| || | || Sbjct 624 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGA 683 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| || | || || | | | |||||| | || || Sbjct 684 ATGCCTTCCTTATC-CTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTAC 742 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||| ||||||||||| |||||||| Sbjct 743 TTCCAGGGTAATGGTCTTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || || | || || | || |||||||| || || ||||| Sbjct 1056 TCTTTTTGAATATTGTAGTCAGATAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAG 1115 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 || | || |||||||| | || | |||||||| || ||| | | |||| || Sbjct 1116 ATGAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCT-TGAATTTTAGCCTTT-ACAT 1173 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| || || || |||| || || |||||||| || || ||||| | Sbjct 1174 TTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAA 1233 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 1234 CAAAAATTTGCAT 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380178114012126