Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15400 246 3e-60 seq72952 141 9e-29 seq6456 125 7e-24 >seq15400 Length=3181 Score = 246 bits (272), Expect = 3e-60 Identities = 479/693 (69%), Gaps = 22/693 (3%) Strand=Plus/Plus Query 19402 CCGACGTTGGGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCG 19461 |||| || ||||| || || || || || |||||||||||||||||||| || |||||| Sbjct 861 CCGAGGTCAGGGTTAGCACCTTTACCACCAGGAAACTCCCAATCGATATCTACACCATCG 920 Query 19462 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCT 19520 ||||||||||| ||| ||| |||| | || || | | ||| ||| | | | | | Sbjct 921 AAGAATTTCCATGTTAGGAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGAT 980 Query 19521 CTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCAC 19580 ||||| | | | | || || || | ||| ||||| || || ||||| || || | Sbjct 981 -TTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAAT 1039 Query 19581 TTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGG 19640 || | | |||| || ||| || ||| | ||||||||||||||||||||| || Sbjct 1040 CTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGG 1099 Query 19641 TTCGTTCCATGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGA 19698 ||||||||| | |||| |||||||| ||||| |||| || ||||| |||||||| Sbjct 1100 CTCGTTCCAT--GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 1157 Query 19699 ATGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCC 19758 || | ||||||||||| |||| ||| ||| || ||||||| |||| ||||||||| Sbjct 1158 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCT 1217 Query 19759 GGGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTAC 19818 || ||| | | ||||| |||||||| || ||||| ||||| | || || || Sbjct 1218 TCGATCTCTTTTAAGCTGTCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAG 1277 Query 19819 AACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACA 19878 | |||||| | | || ||| | || | ||| ||||| || | | ||||| ||| Sbjct 1278 AGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACA 1337 Query 19879 CCCCATTCGACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTTAT 19936 |||||||| || ||||| || || | | ||| ||| || ||| | ||| |||||| Sbjct 1338 CCCCATTCTACGAAGTAGGCGCCCA-CAACTTTTCC-AGATGTTTGCTTGAATGGTTTAT 1395 Query 19937 TGTTTTCGAGATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCGTCCGTGTCGGCTAC 19994 | ||||| ||| ||| | | || || | ||| ||| || || ||||| || Sbjct 1396 TTTTTTC-TCCCAAT-GTATATTCCAGAGGAGGTAAATGACTTCCATCAGTATCGGCCAC 1453 Query 19995 GACAACTTTAACCGGTGCGCTAG-TCGAA---CAGCCGTCGACGTTGCACAGTTTCACAG 20050 ||||| || ||||| | | | | ||| |||||||| | ||||| |||| ||| | Sbjct 1454 GACAATTT----CGGTGGGATCGCTTGAACTGCAGCCGTCTTCATTGCAAAGTTCCACTG 1509 Query 20051 TCATATCGTACTTGCCGCCCTTAGTAACGGGAA 20083 |||| | ||| | || || || | |||| ||| Sbjct 1510 TCATTTGGTATCTTCCACCTTTCGGAACGCGAA 1542 >seq72952 Length=1956 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| ||||||| || | |||| || ||||||||||| || ||||| || Sbjct 1020 CCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGAT 1079 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| |||| |||||||| ||||| ||||| Sbjct 1080 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGA 1139 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| |||| | ||| | ||||| | || ||||||| Sbjct 1140 ATGCCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACT 1199 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | |||||| || || ||||||||| Sbjct 1200 TCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCATA 1247 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || || || |||| |||||||||||||| ||||||||||| Sbjct 1476 CCACCACGAAGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 1535 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| |||| ||||| |||||||| || || Sbjct 1536 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1595 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||||| ||||| | ||| | || || | |||||| ||| Sbjct 1596 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1655 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | ||||| || || || |||||| Sbjct 1656 TCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1703 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | |||||||| | |||||||||||||| |||||||| || Sbjct 1704 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1763 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | ||| || || || | || |||||||| ||||| ||||| Sbjct 1764 AGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1823 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| |||| | ||| | ||||| | || ||||||| Sbjct 1824 ATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACT 1883 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || | |||||| || || ||||||||| Sbjct 1884 TCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCATA 1931 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || || |||| || || ||||| || || |||||||| | Sbjct 564 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 623 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| | || ||||| || || || || || Sbjct 624 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGA 683 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || ||||| || | | || | ||||| | ||||||||| Sbjct 684 ATGCCTTCCTTATCCTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACT 743 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || |||||||| || |||||||||||| Sbjct 744 TCCAGGGTAATGGTCTTTCCTGTTAATGTTTTCACAAATATTTGCATA 791 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || | ||||| ||||| || ||||| |||||||| || Sbjct 792 CCACCTCGCAGACGTAGTACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAT 851 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || || || || ||| |||| |||||||| ||||| ||||| Sbjct 852 AAAGTTCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGTTGTTGATCTGGAGGA 911 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||| || |||| | ||| | ||||| | || || || Sbjct 912 ATACCCTCTTTATCTTGAATCTTAGCCTTTACGTTTTCAATGGTGTCAGATGGCTCCACC 971 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| || || | ||| || || |||||||||||| || Sbjct 972 TCTAGAGTTATGGTCTTTCCTGTAAGTGTCTTGACAAATATTTGCATACCT 1022 >seq6456 Length=2491 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | || |||||| ||||| || | ||||||||||||||||| || || || | Sbjct 1441 CCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGAC 1500 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| |||||||| || ||| | || || | ||| || || ||||| Sbjct 1501 AGTGTGCGTCCA-TCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGG 1559 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||| ||| || | | ||| | ||||| | | ||| || Sbjct 1560 AATGCCTTCTTTATCCTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCAC 1619 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || ||||| |||| |||||| || || |||||||| Sbjct 1620 TTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | || |||||||||||| || | |||||||| ||||| || || ||||| | Sbjct 1213 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGAC 1272 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | ||||| || || | ||||| | || || || ||||| Sbjct 1273 AGAGTGCGTCCA-TCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGG 1331 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||||||| || | | ||| | || || | | ||| || Sbjct 1332 AATGCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 1391 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || ||||| |||| ||||||||| || |||||||| Sbjct 1392 TTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 |||||||| ||||| || ||||| || || ||||| || | ||||| |||||||| || Sbjct 1015 GTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCA-TCTTCAAGTTGTTTTCC 1073 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | || || | || || || || || || ||||| || || ||||||| ||| Sbjct 1074 TGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCTTCCTTATCTTGAATTTTTGCTTT 1133 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | || || ||||||| ||| | ||||||||||| | ||| Sbjct 1134 AACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCGGTAAGTGT 1193 Query 143167 TTTTACGAATATTTGCAT 143184 ||| || || |||||||| Sbjct 1194 TTTCACAAAAATTTGCAT 1211 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 ||||||||||| || || |||||||| | ||| | || | ||||| ||||| ||||| Sbjct 787 GTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCGTCCA-TCTTCAAGTTGCTTACC 845 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | |||| | || || || || || |||||||||||||| ||||||| || Sbjct 846 GGCAAAAATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTT 905 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | | ||||||||| | || | || ||||| |||| || Sbjct 906 AACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGT 965 Query 143167 TTTTACGAATATTTGCAT 143184 ||| ||||| |||||||| Sbjct 966 TTTCACGAAAATTTGCAT 983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || || || | || ||||| || || || || ||||| || || | Sbjct 1908 ACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACC 1967 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || ||||| || ||| | || || | || || |||||||| || |||||||| Sbjct 1968 ATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTT 2027 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||||||| || | | ||| | || || | | ||| ||||| | || | Sbjct 2028 GTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTAAT 2087 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| |||| ||| ||||| || |||||||| Sbjct 2088 TGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389754745040