Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq72952 134 1e-26 seq6456 131 1e-25 seq57945 91.5 1e-13 seq148147 86.0 5e-12 >seq72952 Length=1956 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| |||||||| || ||||| || ||| | | | ||||| ||||| Sbjct 1044 TGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGATAGGGTGCGACCATCTTCCAATTGC 1103 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | ||||||||| || ||||| ||||||||||| |||||| Sbjct 1104 TTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTA 1163 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| |||| || || || |||||| ||||| ||||| ||||| || || Sbjct 1164 GCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAATTGTTTTTCCAGTA 1223 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||||||| Sbjct 1224 AGTGTTTTAACAAAAATTTGCATA 1247 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | |||||||| | || || |||||||| |||||||| || Sbjct 1704 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1763 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| ||||| ||||| ||| | || | ||||||||| || ||| Sbjct 1764 AGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1823 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||| ||||||| |||| || || || |||||| Sbjct 1824 ATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACT 1883 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| ||||| || || || ||||| ||||||||||||||| Sbjct 1884 TCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCATA 1931 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || || ||||| || || |||||||| ||||||||||| ||| | | | || Sbjct 1490 TAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGACCATC 1549 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| ||||| || ||||| | || | ||| || || || ||| || || |||||||| Sbjct 1550 TTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTC 1609 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 ||||| ||| |||||| |||| || ||||| ||| || |||| ||||||| Sbjct 1610 TTGGATTTTAGCT-TTTACATTTTCAATAGTATCAGAGGGTTCCACTTCTAGAGTAATGG 1668 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || ||||| |||||||| |||||| Sbjct 1669 TCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1703 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || || |||||||| | | | | | ||||| Sbjct 582 ACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCC 641 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | || | ||| |||||||| ||||| ||||| || || Sbjct 642 AATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGT 701 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || || || || |||||| || | ||||||||| || Sbjct 702 ATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTT 761 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| | ||||| ||||| ||||||||| Sbjct 762 CCTGTTAATGTTTTCACAAATATTTGCATA 791 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| || || || || ||||| || || ||||| ||| | | | ||| Sbjct 1263 AATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGATAGTGTACGGCCATCT 1322 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | || | | |||||||| ||||| ||||||||||| Sbjct 1323 TCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATACCTTCTTTGTCT 1382 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||||| ||| || |||| || || || |||||| |||| ||| ||||| Sbjct 1383 TGGATCTTTGC-CTTCACGTTTTCAATAGTGTCAGATGGTTCTACCTCTAGGGTGATGGT 1441 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||||| ||||| || ||||| || ||||| Sbjct 1442 TTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 >seq6456 Length=2491 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 |||||||| || | || || || ||||| || || ||||| ||| | | | ||| Sbjct 1228 AAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGACAGAGTGCGTCCATCT 1287 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||| |||||||| ||| | |||| | |||||||| ||||| ||||| ||||| Sbjct 1288 TCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTGTCC 1347 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| ||||||| ||||| | ||| || || || || || ||| Sbjct 1348 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTT 1407 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| |||||||||||||||||||| Sbjct 1408 TTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||| | ||| | || || || || ||||| || || |||||||| | Sbjct 757 CCACCTCTCAGTCTGAGAACAAGGTGGAGAGTAGATTCTTTCTGAATATTGTAATCAGAT 816 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | ||| | ||||| | ||| || || || | ||||| | |||||||| ||| Sbjct 817 AATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGGGGA 876 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| ||||||| ||||| | |||||| Sbjct 877 ATGCCTTCTTTGTCCTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCTACT 936 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || ||||| ||||| || ||||||||||| Sbjct 937 TCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 983 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||| ||||| || || | || | | ||||||||| ||||| ||||||||| Sbjct 1969 TCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTTG 2028 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| ||||||| ||||| | ||| || ||||| ||||| Sbjct 2029 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTAATT 2088 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||||||||||||||| Sbjct 2089 GTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| || | || || ||||||||||| || || || || | | | ||| Sbjct 1456 AACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGACAGTGTGCGTCCATCT 1515 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| || || | || | | ||||||||| ||||| |||||||| || Sbjct 1516 TCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGAATGCCTTCTTTATCC 1575 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| ||| ||| |||| || || || | ||| || ||||| ||||| || Sbjct 1576 TGAATCTTTGC-CTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGT 1634 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||| ||||| |||||||||||||| Sbjct 1635 TTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||||| || || || | ||| || || ||||| || ||||| || Sbjct 985 CCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 1044 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| || || | || | | |||||||| ||| Sbjct 1045 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1104 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || |||||| ||| || ||| |||| || ||||| | || || Sbjct 1105 ATCCCTTCCTTATCTTGAATTTTTGCT-TTAACATTTTCAATTGTATCAGAAGGCTCAAC 1163 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || || || || || ||||| |||||||||||||| Sbjct 1164 TTCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCAT 1211 >seq57945 Length=292 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||| ||||||||||| |||||| ||| ||| ||||||| ||||| | ||| Sbjct 292 GGAATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 233 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| || ||||| || ||||||||||||||||| Sbjct 232 ACTTCCAATGTAATCGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 183 >seq148147 Length=616 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| ||||| |||||| ||| |||||| |||| || || ||| | ||| Sbjct 616 GAATGCCTTCCTTGTCTTGAATTTTCGCT-TTTACATTTTCAATAGTGTCGGAAGGTTCA 558 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || |||||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct 557 ACTTCCAAAGTAATGGTTTTACCCGTGAGTGTTTTTACGAAAATCTGCAT-TTTGA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361047669217527