Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq15400 210 2e-49 seq6456 109 5e-19 seq91968 98.7 8e-16 seq72952 98.7 8e-16 >seq15400 Length=3181 Score = 210 bits (232), Expect = 2e-49 Identities = 743/1135 (65%), Gaps = 43/1135 (4%) Strand=Plus/Plus Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171 ||||| ||||| | | || |||||||||||||||||||||||||| || | || || Sbjct 183 TTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAAGCAAAGAGACCACCT 242 Query 100172 AATCCGTTTTGATCT-ACATAACTATTTTTTGCTAATACAGAATCGA-CACTGTCAAAAG 100229 | | ||| | ||| ||||| || ||| | | || || || | || ||||| | | Sbjct 243 AGTTTGTTATT-TCTCACATATTTACCCTTTTCAATAACTGA-TCTAGCATTGTCATAGG 300 Query 100230 AGATTAAATCGCCCTTGTCTTTGT-TAAAAACGTAAGCCGCTTTAGCGAC-----CG-AA 100282 | | || || | | | || | || || |||| |||| ||||| || || Sbjct 301 TTACAAGGTCTCCAGT-TGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTAA 359 Query 100283 TCAAATTTGTAAATGTACTTGTTCAATT-CGTTTTCAATTTGGCGATAATCGACAACGCC 100341 | ||||| | || |||| ||||| | || |||| | | || || || || || Sbjct 360 TGAAATTCCCACTTGC-CTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCC 418 Query 100342 GTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACC 100398 ||||| |||||| || | || || || | ||| |||||||||| | |||||| | Sbjct 419 GTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 478 Query 100399 GTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTT 100458 || || | ||||| |||||||| || || ||||||||||| || | | ||| || Sbjct 479 GTAAT---CATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTAATACAATCTT 535 Query 100459 GCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTC 100518 || | ||| ||||| | | |||| || || || | |||| || Sbjct 536 CTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTC 595 Query 100519 GTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTG 100574 || || ||||| |||||||| | | ||||| | | |||| ||| |||| Sbjct 596 CTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCA---TTTG 651 Query 100575 ACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCA 100633 ||||||| ||||| || || || ||||| |||||| || | ||| | | ||||| || Sbjct 652 ACCAGGCTCCTTTGAAGTCATAACTCATCAAGAAA-ATATGATCCATATAATTTTGAGCC 710 Query 100634 ACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCG 100693 | |||| | || || ||||| || | || || || || || ||||||||| Sbjct 711 TTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAACTCG 770 Query 100694 TACGTTTTGCCCGTTTGCAGTTGTA-GCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAA 100752 || | ||||| | | || || | ||| || |||||| | || ||||| |||| || Sbjct 771 TATTTCTTGCCATTCTT-AGCTGAAAGCTCATCGAGCATCTCACGTAATTCTTTCATCAA 829 Query 100753 AATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGC 100811 | | || || | || || | | || || ||| ||||| || ||||| | Sbjct 830 ACTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTAC 885 Query 100812 CGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATT 100871 | || ||||||||||| || || || || || || || || ||||| | | ||| | Sbjct 886 CACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAACT 945 Query 100872 CCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAAC---G 100928 |||| || || | |||||| || | | | | | || | ||| |||| | Sbjct 946 CCTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAG 1002 Query 100929 GGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCT 100988 | |||| | |||||| || || || || || ||||| || | | || ||| | | Sbjct 1003 GATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTT 1062 Query 100989 TGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCT 101048 | | ||||| || || || ||||| ||||| ||||||||||||| |||| || | Sbjct 1063 TTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTT 1122 Query 101049 TTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGAC 101108 |||| |||||||||| ||| ||||| |||||||| || | ||||||||| || ||| | Sbjct 1123 TTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGC 1182 Query 101109 CCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGA 101168 | | ||||| || ||||| |||| |||||||| || ||| | | ||| || | Sbjct 1183 CGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTA 1242 Query 101169 GGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGG 101223 |||||| |||||||||||||| || || || || | || ||| | ||||| || Sbjct 1243 TGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGG 1297 >seq6456 Length=2491 Score = 109 bits (120), Expect = 5e-19 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || |||| |||| |||||| ||||| ||||||||||||||||| || | Sbjct 983 TTCCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTG 1042 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 || ||| |||||| || || ||||| || ||| ||||||| ||||| || || Sbjct 1043 ACAGTGT----GCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCT 1098 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | || || || || |||||| ||| || | | | ||||| |||| Sbjct 1099 GGGGGAATCCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGC 1158 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | ||||| || || || || | ||||| ||||||||||||||| Sbjct 1159 TCAACTTCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCATT 1212 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || |||| |||||| ||||| ||||| ||||||||||| || | Sbjct 2123 TTCCACCTCTCAGCCGTAGTACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 2182 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| | || || ||||| || || ||| |||||||||| |||||||| || Sbjct 2183 ATAGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 2242 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||| || |||||| || || | | | ||||| || ||| Sbjct 2243 GAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 2302 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | || || || || || || | || || ||||||||||||||| Sbjct 2303 CTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 2352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| || || ||||| |||||||| ||||| | || || | || Sbjct 1912 AACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACCATCT 1971 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| ||||||| ||||| || || || | || |||||||| Sbjct 1972 TCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTTGTCT 2031 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| || || | | | ||||| || ||| ||| | ||||| ||| Sbjct 2032 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTAATTGTT 2091 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || | || || ||||||||||||||| Sbjct 2092 TTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 2124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || ||||| ||||| ||||||||||| || | || ||| | || || ||||| Sbjct 1693 TGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGACAGTGTACGTCCATCTTCGAGCTGC 1752 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||||||||| |||||||| ||| | ||||||||| || |||||| Sbjct 1753 TTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTT 1812 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | | ||||| || ||| ||| | || || || || || || Sbjct 1813 GCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTC 1872 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 | || || ||||||||||||||| Sbjct 1873 AGTGTCTTTACAAAAATTTGCATT 1896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| ||||| |||||||||||||| ||||| | || || |||||| Sbjct 1228 AAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGACAGAGT----GCGTCC 1283 Query 18890 ----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTT 18945 || | |||||| || || |||| || ||||| || || || | ||| || || Sbjct 1284 ATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTT 1343 Query 18946 GTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAAT 19005 ||| |||||| || || | | | ||||| || ||| ||| | || || Sbjct 1344 GTCCTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGAT 1403 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| ||||| | ||||| ||||||||||||||| Sbjct 1404 AGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCATT 1440 >seq91968 Length=4039 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| ||| || || || || ||||||||||| Sbjct 800 CGCAGGAAGGGGCACTGGGGCGCCCACCGTTGGTGGTCCTTGGCGGGATCGTCGCCCGCG 859 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| || ||||| |||| | Sbjct 860 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCACCGCGGCCCAGG 919 Query 25350 TAGTAGAACCCATT 25363 || ||||| || || Sbjct 920 TAATAGAAGCCGTT 933 >seq72952 Length=1956 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | | ||| |||| ||| | ||||| || |||||||| |||||||| | Sbjct 1474 TTCCACCACGAAGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAG 1533 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | || |||| || ||||| ||| | ||||| | ||||||||| | Sbjct 1534 AAAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTG 1593 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| ||||| |||||| | | | |||||| || ||| Sbjct 1594 GGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 1653 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||| || || |||| ||||| |||||||| ||||| Sbjct 1654 CTTCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413277579609718