Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq72952 111 1e-19 seq6456 96.9 2e-15 >seq72952 Length=1956 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| || |||| |||| || | || || |||||||| |||||||| ||||| Sbjct 1019 ACCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 1078 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || | || ||||||||||| ||| ||| || | |||||| || || | || Sbjct 1079 TAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGG 1138 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || || | ||| ||||| ||| ||| ||||| || || Sbjct 1139 AATGCCTTCTTTGTCTTGAATTTTAGCC---TTTACATTTTCAATTGTGTCAGAGGCTTC 1195 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || |||||||| ||||| ||||| || ||||||||||| Sbjct 1196 TACTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | || |||||||| || || |||||||| || ||||| ||||| Sbjct 1703 ACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGA 1762 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || ||||||||||| || || || | |||||| || || | || Sbjct 1763 AAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGG 1822 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | |||| |||| ||| ||| ||||| || || Sbjct 1823 AATGCCTTCTTTGTCTTGGATTTTAGCCT---TTACATTTTCAATTGTGTCAGAGGCTTC 1879 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || |||||||| ||||| ||||| || ||||||||||| Sbjct 1880 TACTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1930 Score = 102 bits (112), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || ||||| || | || || |||||||| || ||||||||||| | | || | Sbjct 1488 CGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGACCA 1547 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||| ||| ||| || | ||| ||||| || | || ||||| ||||| Sbjct 1548 TCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTG 1607 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || |||||| ||| ||| || || ||||| || || ||||| Sbjct 1608 TCTTGGATTTTAGC---TTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCTAGAGTA 1664 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||| || ||||| ||||| Sbjct 1665 ATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || |||||||| || |||||||||||||||||| || | || ||| Sbjct 582 ACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCC 641 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 |||||||| ||| ||| || | ||| || ||||| | ||| |||||||| || || Sbjct 642 AATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGT 701 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | || ||||| |||| || ||||| || || || Sbjct 702 ATTTTAGCC---TTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTC 758 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| || || |||||||| Sbjct 759 TTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 >seq6456 Length=2491 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || |||| |||||||| || ||||| || || |||||||||||||| || || ||| Sbjct 1441 CCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGAC 1500 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || || || | ||| ||||| ||| || | | ||| ||||| | || Sbjct 1501 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGA 1560 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 1561 ATGCCTTCTTTATCCTGAATCTTTGCC---TTAACATTTTCGATTGTGTCAGAAGCTTCC 1617 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || ||||| || || || ||||| || ||||||||||| Sbjct 1618 ACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317781665757606