Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq72952 152 5e-32 seq6456 136 4e-27 seq57945 127 2e-24 >seq72952 Length=1956 Score = 152 bits (168), Expect = 5e-32 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || || || | ||||||||||||||| | |||||||| ||||||| | Sbjct 1260 CGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAG--ATAGTGTACGGC 1317 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| ||||| |||||||| |||| || | || || || ||||| ||||||||||||| Sbjct 1318 CATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATACCTTCTT 1377 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || |||||||| ||| | | |||||||| | || || || | |||| Sbjct 1378 TGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCAGATGGTTCTACCTCTAGGGTGA 1437 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| |||||||| || |||||||||||||| Sbjct 1438 TGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 Score = 122 bits (134), Expect = 8e-23 Identities = 174/242 (72%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| ||| |||| |||| ||| | || ||||| ||||| | Sbjct 1007 AAATATTTGCATACCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAAT 1066 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || |||| || || ||| |||| || || || ||||||| | | | Sbjct 1067 ATTGTAGTCAG--ATAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGT 1124 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||||||||| ||||||||||| | |||||| ||||| || | | ||| Sbjct 1125 TGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTG 1184 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | || || |||||||||||||| ||||| ||||| || ||| Sbjct 1185 TCAGAGGCTTCTACTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGC 1244 Query 95006 AT 95007 || Sbjct 1245 AT 1246 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | || || |||||||||||||| ||||| | Sbjct 1691 AAAAATCTGCATACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGAT 1750 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | ||||| || ||| |||| || || || | || || | | | Sbjct 1751 GTTGTAGTCAG--AAAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGT 1808 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||||||||| ||||||||||| | ||||| ||||| || | | ||| Sbjct 1809 TGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTG 1868 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | || || |||||||||||||| ||||| ||||| || ||| Sbjct 1869 TCAGAGGCTTCTACTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGC 1928 Query 95006 AT 95007 || Sbjct 1929 AT 1930 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || || |||||||||||||| || || || || | || || || Sbjct 336 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG-- 393 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || |||||||||||| || || | || |||| | ||| |||||||| | Sbjct 394 AGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGG 453 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| |||||||| | || || || || || | | |||||| | | | || | Sbjct 454 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCA 513 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| ||||| || || || || || |||||||||||||| Sbjct 514 CTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| |||||||| | ||| || || ||| ||| | ||| |||||||| || | Sbjct 822 GTAGACTCCTTTTGGATGTTGTAGTCCG--ATAAAGTTCGCCCATCTTCCAGCTGCTTGC 879 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||| | | ||| ||||||||||||||||| ||||| || | ||| || |||| Sbjct 880 CGGCAAAGATGAGACGTTGTTGATCTGGAGGAATACCCTCTTTATCTTGAATCTTAGCCT 939 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| | | ||||||| | || || || | || ||||| ||||| ||||| | Sbjct 940 TTACGTTTTCAATGGTGTCAGATGGCTCCACCTCTAGAGTTATGGTCTTTCCTGTAAGTG 999 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || ||||| || ||||| Sbjct 1000 TCTTGACAAATATTTGCAT 1018 >seq6456 Length=2491 Score = 136 bits (150), Expect = 4e-27 Identities = 180/248 (73%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 |||| |||| ||| || ||| || || | |||||||| ||||||||||||||||| || Sbjct 1422 TTTTACAAAAATTTGCATTCCACCCCTTAGACGCAACACTAAGTGCAAAGTAGATTCTTT 1481 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||| | ||||| | || | ||||| | ||| || || |||||||| |||| || Sbjct 1482 TTGTATATTATAGT--CTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATA 1539 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 | ||||| || || |||||||| |||||||| || | ||| |||||||| || || Sbjct 1540 AGCCTTTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTAACATTTTCG 1599 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||||||| || || || | || || ||||| ||||| || ||||| ||||| Sbjct 1600 ATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAA 1659 Query 95000 ATCTGCAT 95007 || ||||| Sbjct 1660 ATTTGCAT 1667 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | ||||| || ||||||||||||||||||||||| | Sbjct 1200 AAAAATTTGCATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAAT 1259 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| || |||| ||| || | |||||| ||| | || || | || || Sbjct 1260 ATTATAATCAGACAGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTG 1319 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||||||||| ||||| ||||| | |||||||||||| || | | || || Sbjct 1320 TTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCTATTGTATC 1379 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 1380 AGAAGCTTCCACTTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 129 bits (142), Expect = 5e-25 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | |||||||||||||||||||| |||||||| || | Sbjct 1884 AAAAATTTGCATTCCACCCCTAAGACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAAT 1943 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | | || || || ||| || |||||||| || |||| || | || Sbjct 1944 ATTATAATC--TGACAGCGTACGACCATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTC 2001 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || |||||||| ||||||||||| | |||||||||||| || | | || Sbjct 2002 TGTTGGTCGGGAGGAATCCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTA 2061 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | || || ||||| ||||| || || || ||||| || ||| Sbjct 2062 TCAGAAGCTTCCACTTCTAATGTAATTGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGC 2121 Query 95006 AT 95007 || Sbjct 2122 AT 2123 Score = 125 bits (138), Expect = 6e-24 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| ||||||| || | |||| |||||||||||||||||| || | Sbjct 2112 AAAAATTTGCATTCCACCTCTCAGCCGTAGTACCAGGTGCAAAGTAGATTCCTTCTGAAT 2171 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || ||||||| | ||| || ||||| ||||| |||| || | |||| Sbjct 2172 ATTGTAGTCAG--ATAGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTT 2229 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || ||||| || | |||||||||||| || | | || Sbjct 2230 TGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTA 2289 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| || || || ||||| || ||| Sbjct 2290 TCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGC 2349 Query 95006 AT 95007 || Sbjct 2350 AT 2351 Score = 118 bits (130), Expect = 9e-22 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| ||||||| || | ||||||||||| |||||||||||||| | Sbjct 973 AAAATTTGCATTCCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATA 1032 Query 94829 TTATAATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || | || | ||||| | ||| || || |||||||| |||| || | || | Sbjct 1033 TTGTAGT--CTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCT 1090 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| ||||| ||||| || || | ||||||||| || || | | || | Sbjct 1091 GTTGGTCTGGGGGAATCCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTAT 1150 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| || || || || || ||||| ||||||||||| || |||| Sbjct 1151 CAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCA 1210 Query 95007 T 95007 | Sbjct 1211 T 1211 Score = 114 bits (126), Expect = 1e-20 Identities = 175/246 (71%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 94765 TTTAA-AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTT 94823 ||||| || ||||||| || ||||||| || | || | ||| | ||||||||| || | Sbjct 740 TTTAAGAAGTTTACACACCACCTCTCAGTCTGAGAACAAGGTGGAGAGTAGATTCTTTCT 799 Query 94824 GCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 | | || ||||| ||| |||| | ||| || || || || ||| |||| || || Sbjct 800 GAATATTGTAATCAG--ATAATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAAAATCAA 857 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 || || || ||||| ||||| ||||||||||| | |||||||||||| || | | Sbjct 858 CCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTAACATTTTCTAT 917 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 || |||| || || || | ||||| ||||| ||||| || |||||||| || || Sbjct 918 TGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAAT 977 Query 95002 CTGCAT 95007 ||||| Sbjct 978 TTGCAT 983 Score = 114 bits (126), Expect = 1e-20 Identities = 116/149 (78%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | |||||||||||||||||||| |||||||| || | Sbjct 2340 AAAAATTTGCATTCCACCCCTAAGGCGCAACACCAAGTGCAAAGTTGATTCCTTCTGAAT 2399 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||| || | ||||| || ||| || ||||||||||| |||| || | || Sbjct 2400 ATTATAAT--CTGACAGTGTACGACCATCTTCTAGCTGTTTTCCTGCAAAAATAAGCCTC 2457 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTC 94914 || || || |||||||||||||||||||| Sbjct 2458 TGTTGGTCGGGAGGAATACCTTCTTTGTC 2486 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| |||| || || || || ||||||||||| || | Sbjct 1656 AAAAATTTGCATCCCACCTCTCAGACGCAGAACTAAATGTAAGGTAGATTCCTTCTGAAT 1715 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || | | ||||| | ||| || ||||| ||||| |||| || | |||| Sbjct 1716 ATTGTAGTC--TGACAGTGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTT 1773 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || ||||| || | |||||||||||| || | | || Sbjct 1774 TGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTA 1833 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| || || || ||||| || ||| Sbjct 1834 TCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGC 1893 Query 95006 AT 95007 || Sbjct 1894 AT 1895 >seq57945 Length=292 Score = 127 bits (140), Expect = 2e-24 Identities = 130/168 (77%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | |||||||||||||||||||| |||||||| || | Sbjct 194 AAAAATTTGCATTCCACCCCTAAGACGCAACACCAAGTGCAAAGTCGATTCCTTCTGAAT 135 Query 94828 GTTATAATCGCTCATAGTGTTGG--AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||| | || | ||||| | ||| ||||| || |||||| | || |||| |||| Sbjct 134 ATTATAGT--CTGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATTAGTCTT 77 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || ||||| |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 76 TGTTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446854723696920