Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq42954 500 1e-136 seq181590 91.5 2e-13 seq188143 89.7 6e-13 >seq42954 Length=2876 Score = 500 bits (554), Expect = 1e-136 Identities = 1097/1622 (68%), Gaps = 45/1622 (3%) Strand=Plus/Plus Query 61977 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62036 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 522 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 581 Query 62037 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62096 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 582 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 641 Query 62097 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62156 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 642 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 701 Query 62157 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62215 || || ||||| | |||| || || ||| ||| ||||| | ||||| || || || Sbjct 702 TCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 761 Query 62216 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 62272 |||| | |||| || | ||| | |||| | || |||||| | ||||| Sbjct 762 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 820 Query 62273 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 62331 ||| || || || |||| |||||| | |||| || ||| | | || ||||| | | Sbjct 821 ATTTTTCATATCTTCATCCCATAAATCAG-CTCGAGTCAAATCAGTCAGAAGATGATGGT 879 Query 62332 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62391 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 880 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 939 Query 62392 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 | | || ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 940 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 999 Query 62452 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 62509 ||| | ||| | | ||| ||||| || || || ||||| || ||| | ||| Sbjct 1000 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCA 1057 Query 62510 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62568 ||| || | || || || ||||| | || || | || Sbjct 1058 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACT 1117 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 |||| |||||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1118 -TCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1176 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 |||| |||||||| ||||| || || | | ||| || | ||||| | || || Sbjct 1177 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1236 Query 62689 ATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 | || || | | | | | ||| | || || | || |||||||||||||||| ||| Sbjct 1237 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGACAGGA 1295 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1296 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1355 Query 62808 TTATTGAGATTTCTGA----CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 || || | ||| |||| |||| ||| | | || || | ||| ||||| ||| Sbjct 1356 TTGTTTAAATT-CTGAGTCACAAT--CTTAGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1411 Query 62864 TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 ||| || | ||||||||||| | || | || || || || || || || || || Sbjct 1412 TCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 1471 Query 62924 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 62980 || | || | | ||||| | | ||||||||||||||| ||||| || ||||| || Sbjct 1472 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 1528 Query 62981 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63040 | ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||| Sbjct 1529 AAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATACAACATATATGGTGTACC 1588 Query 63041 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63100 ||| || | |||| ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1589 AGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTC--GTTTT 1646 Query 63101 GTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 || | ||| |||| || ||| | ||| | | |||||| || ||||| || Sbjct 1647 ATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCCGTAACAG 1706 Query 63159 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63218 | | | |||||||| |||| |||||||| | ||| ||| |||||||| || Sbjct 1707 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCT 1763 Query 63219 ---CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| | Sbjct 1764 ACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATT 1823 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || ||||| |||||||| | ||| | |||| | | || || | |||||| || Sbjct 1824 TCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGC 1883 Query 63336 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63395 || ||||| || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 1884 TCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCA 1943 Query 63396 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63455 || || || || |||||||||||||| | | ||| ||||| | ||||| || || | Sbjct 1944 GTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCT 2003 Query 63456 ATATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 ||||| || ||| | ||| || || || || |||||| || || || | Sbjct 2004 ATATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGAT 2060 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 ||||| |||||||| ||| ||||||| || || | ||||| || || ||||| || || Sbjct 2061 TTAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTC 2120 Query 63573 AT 63574 || Sbjct 2121 AT 2122 Score = 105 bits (116), Expect = 8e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| |||||||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2583 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2642 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2643 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2693 >seq181590 Length=632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 603 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 544 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 543 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 484 Query 64086 GTTACTCCATTATATATTCC 64105 ||||| ||| |||||| || Sbjct 483 GTTACACCAGAATATATGCC 464 >seq188143 Length=771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 ||||||| ||||||||||| | |||||||| ||||| || || ||||| ||||| | | Sbjct 481 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTGTACATCTGC 540 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 || ||||| |||||| |||||||| ||||| |||| Sbjct 541 CATATGTCTGGATATTGAATTGGGAATATAACGAATC 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620951066926520