Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq42954 114 3e-20 seq11492 89.7 1e-12 >seq42954 Length=2876 Score = 114 bits (126), Expect = 3e-20 Identities = 466/724 (64%), Gaps = 14/724 (2%) Strand=Plus/Minus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 |||||| | || || ||||| ||| || ||||| |||||| || || ||||| || Sbjct 2152 CCACAGCTTTCCTCCTGCTTCCTTATAGCTATGAAAGACGATAGTATTGAAGGTATTTTC 2093 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 || || | || | ||||| | ||||| || ||| || || || ||| || || Sbjct 2092 GATACTTTAAAACAATGTGCATTAATTTCTAAATCTGCCGGTGGCATAGGTTTAC--ATA 2035 Query 363712 CACAATG--TTCGTGCACAGAACAGTTACATTCGCGGCAC--AGGGGGATACTCGAATGG 363767 |||| || || | || ||| ||| || ||||| | |||| | || ||||| Sbjct 2034 CACATTGCATTAGAGCCCAGGGGTCTTATATAGCTGGCACTAATGGGGTT--TCAAATGG 1977 Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827 || || || ||| | | |||| |||||||||| || || || || || |||||| Sbjct 1976 TCTAGTGCCAATGTTGAGAGTGTACAACAATACTGCCAGATATGTAGATCAAGGTGGAAA 1917 Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887 || || || || ||||| || || | |||||| ||||| || || |||||||| Sbjct 1916 CAAACGTCCCGGTGCATTTGCAATTTACTTAGAGCCTTGGCATGCGGACATATTTGAGTT 1857 Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947 | || | || ||||| || || || ||| || | || | || ||||| ||||| Sbjct 1856 CTTAGATTTAAAAAAGAACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGC 1797 Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTT 364007 | ||| | | || | |||||||| | || || | | | ||||| ||| | Sbjct 1796 TTTATGGATACCAGATCTGTTTATGAAAAGGGTAGAAAAGGATGAAGATTGGAGTCTCAT 1737 Query 364008 TTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTAT 364066 || || || || ||||| || || | || ||| | || || || | | || |||| Sbjct 1736 GTGTCCTCATGATTGTCCTGGCCTCGCTGACTGT-TACGGAGAGGAATTCGAAGCACTAT 1678 Query 364067 ACGAAAAGTATGAATCGGAGGGAAA-GGCTCGTAAGACAATTCCC-GCACAGAAGCTATG 364124 | | || |||||| | || ||| || | ||| || | || || || || |||| Sbjct 1677 ATGCCAAATATGAA--GAAGAAAAACGGTTTATAAAACGAGTCAGAGCTCAAGAGTTATG 1620 Query 364125 GTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTC 364184 | | || || || | || | ||||| || ||||| ||||||||||| || ||| | Sbjct 1619 GAAGTCAATTATAGAAGCTCAAGTGGAGACTGGTACACCATATATGTTGTATAAGGATGC 1560 Query 364185 GTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTAC 364244 |||||| | ||| || || | | ||||| || ||| | ||||| || || || Sbjct 1559 TTGCAACAGGAAGAGTAATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGCAC 1500 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||| || | ||||||| | || || || || || |||||||| || || || Sbjct 1499 TGAGGTTGTGCAATACACTTCAGAAGATGAAGTGGCAGTGTGCAACCTTGCTTCCATAGC 1440 Query 364305 GCTT 364308 ||| Sbjct 1439 ACTT 1436 >seq11492 Length=3974 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 ||||| | ||||| ||||||| |||| | || | ||||||| |||| |||| Sbjct 2187 TTACGGACAGTTCCATCATAATGTACCATAACAGACTCCATAGCCTTTATTAGACGACGC 2128 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGAC 65991 || ||||||||| | | |||||||||||||| ||||||| |||||||||||| || | Sbjct 2127 TGAATGTAACCAGTTTCAGCAGTTTTTACCGCAGTATCAATGAGACCTTCACGACCTCCC 2068 Query 65992 ATTGCAGAAAAGAAAAACTCAG 66013 || || || ||||||||| Sbjct 2067 ATGGCGTGGAAATAAAACTCAG 2046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299072805563354