Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq15400 273 2e-68 seq6456 123 2e-23 seq72952 116 3e-21 seq57945 105 6e-18 seq45346 82.4 7e-11 >seq15400 Length=3181 Score = 273 bits (302), Expect = 2e-68 Identities = 763/1155 (66%), Gaps = 27/1155 (2%) Strand=Plus/Minus Query 55653 AAAGGCGGTCGATATATAATGACCGTAAAGCTATGCAACTCGGACGGATGCACTTCGAGT 55712 ||||| || |||| |||||| || | || ||||| ||||| |||| ||| || Sbjct 1531 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGAAGACGGCTGCAGTTCAAGC 1472 Query 55713 CAAGCGGTCGAAGTTGTAATCGCAGATACGGACGGTTCTCATCTTGCTCCGCTCTATTAC 55772 | | |||| |||| | || ||||| || || |||| | |||| || | || Sbjct 1471 GATCCCACCGAAATTGTCGTGGCCGATACTGATGGAAGTCATTTACCTCCTCTGGAATAT 1412 Query 55773 GAATATCAGGAATTAAATCAACCTTTCGAAACGCGAGTCGTGGATAAAATCGTTGCCGCA 55832 || ||| |||| |||| ||| || | || |||| ||| | || | ||| Sbjct 1411 ACATTGGGAGAAAAAAATAAACCATTC-AAGCAAACATC-TGGA-AAAGTTGTGGGCGCC 1355 Query 55833 TATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACTCCT 55892 || || || || |||||||| |||| ||| || || || || ||| | || | ||| Sbjct 1354 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCT 1295 Query 55893 AATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAACGAC 55952 ||||| | || | ||||| || || || || || |||||||| |||||||| || ||| Sbjct 1294 AATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAATGAC 1235 Query 55953 AGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGAGAC 56012 || | || ||| || ||||| |||| || || || || ||| || || || Sbjct 1234 AGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCCGTGAG 1175 Query 56013 GACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAAGTG 56072 ||||||||||| || || || || || ||||| || | ||||| || |||||| | || Sbjct 1174 GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 1115 Query 56073 ACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACTGGCG 56132 | |||||||||| || ||||||||||||||||| ||||| ||| || |||| || Sbjct 1114 TCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGC- 1056 Query 56133 AATCCCCATG--TTAAAG-TGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCC---G 56186 | || || || ||| | || || ||||| ||||| ||||| | ||||||| Sbjct 1055 --CCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTGCCGATCCTTTC 998 Query 56187 TTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGAGTTT 56246 ||||||| || || | | || | | | ||||| | || || |||||| Sbjct 997 TTCTTTTTAGTTGACAAATC---TAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 941 Query 56247 TTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAG 56306 | | || |||||||| ||||||||||| || ||||| ||||||||||| || || || Sbjct 940 CTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAAA 881 Query 56307 GGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTA 56366 || || || | || |||| | ||| ||| | | || | | || | Sbjct 880 GGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 824 Query 56367 CGAGATTTACGCGAAGCGCTAGACCGAC--TAAGCCTCGAAACGAATCGAACATACGAGC 56424 ||| ||||| || ||| || | | ||| ||| | | ||| ||||||| Sbjct 823 AAAGAATTACGTGAGATGCTCGATGAGCTTTCAGCTAAGAATGGCA-AGAA-ATACGAGT 766 Query 56425 TAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCTC 56484 | || || |||||| | || || |||||| || || |||||| |||| Sbjct 765 TGACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGCTC 706 Query 56485 AAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAATA 56544 |||| ||| | ||| ||||||| ||||||| || || || ||||| || ||||| ||| Sbjct 705 AAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAAGGAGCCTGGTCAAATG 646 Query 56545 GCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACACTATA 56604 ||| || |||| || | |||||||||||||| | ||||| || ||| || | Sbjct 645 ATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAATCCCAAGGAAACTTACA 586 Query 56605 CGACCGATTTTGCGGT-TCGTGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGATTGTA 56663 | | || || | || | || || | ||| ||| | ||| ||||||||| Sbjct 585 CATCTGACTTCGGAGTAAAATACT-TGTTGGCACAGGGAGTGAATCCTAAGAAGATTGTA 527 Query 56664 GTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAAAAAC 56723 | || || || ||||| ||||| || ||||| ||||| ||||| || ||| ||| Sbjct 526 TTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACGAAGAC---AAC 470 Query 56724 AATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTCGTT 56783 | ||| || | |||| || | ||||||||||||||||| ||| |||||||||| ||| Sbjct 469 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTGGTT 410 Query 56784 GATTTTAGAGAAATT 56798 || | || || ||| Sbjct 409 GACTACAGGGAGATT 395 >seq6456 Length=2491 Score = 123 bits (136), Expect = 2e-23 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||| ||| | ||||| | ||||| || || Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||||| || ||||||||||| ||||| || ||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 || || || |||| | || || ||||| |||||| ||| | || |||| || |||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCA--GACTATA 1490 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | || |||||||||||||| | || |||||||| Sbjct 1489 ATATACAAAAAGAATCTACTTTGCACTTAGTGTT 1456 Score = 113 bits (124), Expect = 4e-20 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||||||| | || || ||| | || || | ||||| || || Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||| ||| ||||| |||||||| ||||| || || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTAT 24167 |||||| ||||||| || |||||| || | |||||| ||| | | ||| |||||| Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTC--TGATTAT 1263 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||| |||||||| | || ||||| || Sbjct 1262 AATATTCAAAAGGAATCTACTTTGCACTTAGTTTT 1228 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||| ||| | || || | ||||| || || Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||| ||| |||||||||||||| || || || || Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| |||||| | ||| |||||||| ||||||| ||| | | | | ||||| | Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAA-CATTATCTGATTACA 806 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| ||||||||||| | || | || | ||| ||||||| || Sbjct 805 ATATTCAGAAAGAATCTACTCTCCACCTTGTTCTCAGACTGAGAGGTGG 757 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| ||| | ||||| ||| | ||||| | ||||| || || Sbjct 2124 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACAATTACATTAGAAGTGGAAGCTTC 2065 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||| ||| ||||||||||| || |||||||| || Sbjct 2064 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGGATTCCTCCCGACCA 2005 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTAT 24167 |||||| || |||| | || || || || ||||||| | | |||| |||||| Sbjct 2004 ACAGAGGCTTATTTTTGCAGGGAAACAGCTAGAAGATGGTCGTACGCTGTCA--GATTAT 1947 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| || ||||| || | || || ||||| Sbjct 1946 AATATTCAGAAGGAATCAACTTTGCACTTGGTGTT 1912 >seq72952 Length=1956 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||||||| | ||||| | ||||| || ||| Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || || |||||||||||||| ||||| |||||| Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||||||||| | ||||||| | | | || || ||| Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAC 1751 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||||||||| | |||||||| | | || ||||| || Sbjct 1750 ATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGG 1704 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | ||||||||| | ||||| | ||||| || ||| Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| |||||||||||||| ||||| |||||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | || |||||| | ||||||| | | | | || || || Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACAAT 1067 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || |||| | || | | ||| ||||||| Sbjct 1066 ATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || |||||| | || ||| | || || || ||| Sbjct 1475 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAA-CCAT 1417 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | ||||| || || | || || |||||| ||||||||||| || || || || | Sbjct 1416 CTGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACC 1357 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 ||||||| || |||| | || || ||||| ||||||| | | | | ||||||| Sbjct 1356 AACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATA 1297 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | |||||||| |||||||| | |||||||| || Sbjct 1296 ATATTCAAAAGGAATCTACTCTACATTTAGTATT 1263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||||||||| | ||||| | ||||| || || Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || |||||||| ||||| || || ||||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || |||||| | ||||||| | | | ||||| ||| Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||||||||||||||| |||| || || ||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTA 1490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||||||||| ||||| | |||||| | ||||| || ||| | Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGA-ACCATC 732 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | || || || || || || |||||||| || || || || Sbjct 731 TGACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCA 672 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||| | || |||| | || |||||| | ||||||| Sbjct 671 ACAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATG 634 >seq57945 Length=292 Score = 105 bits (116), Expect = 6e-18 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | || || ||||||| ||||| |||||||| |||||||||||| Sbjct 15 GATACAATCGAGAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAA 74 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 || ||||| |||| || ||| |||||||| |||||| ||| | || |||| || |||| Sbjct 75 CAAAGACTAATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCA--GACTATA 132 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | ||||| || ||||| || | || || ||||| Sbjct 133 ATATTCAGAAGGAATCGACTTTGCACTTGGTGTT 166 >seq45346 Length=523 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 120879 CATCCTAATGTGAAGGCATTCGTGACTCAGGGCGGAGTACAATCGACGGACGAAGCTATT 120938 |||||||||||||| ||||| | || || ||||| |||||||||| || ||||| || Sbjct 38 CATCCTAATGTGAAAGCATTTATAACCCAAGGCGGTCTACAATCGACAGATGAAGCAATA 97 Query 120939 GAAGCGCTCGTGCCGCTGATCGGACTACCAATGATGGGAGATCAGGCGTTTAA 120991 |||| || || || || ||| |||||||| | ||||||||| ||| || Sbjct 98 ACAGCGGGTGTACCTCTAATTGGAGTACCAATGCTAGGAGATCAGTGGTTCAA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428592781453785