Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq15400 199 3e-46 seq72952 95.1 1e-14 >seq15400 Length=3181 Score = 199 bits (220), Expect = 3e-46 Identities = 768/1192 (64%), Gaps = 31/1192 (3%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| | ||| Sbjct 180 ATGTTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAAGCAAAGAGACCA 239 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| ||||| | | ||||||| ||| || | ||||| || | || | ||||| Sbjct 240 CCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGATCTAGCATTGTCATAG 299 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAAA 96007 | | | || || ||| | | | || | | || | |||| || || ||||| | Sbjct 300 GTTACAAGGTCTCCAGTTGATGGTCTGAAGA-CATAAGGAGCTTGGGCGACATTGTCGTA 358 Query 96008 TTTAACAATATATTTGTTT------ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 | || | ||| | ||||| || || | | || ||||| || || Sbjct 359 ATGAAATTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCC 418 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || ||| Sbjct 419 GTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 478 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| || |||||||| || ||||| |||||||| || || | | ||| || Sbjct 479 GTAATCATGA-ACGCCAGTCCAACCACGACCATACATGGCAACACCTAATACAATCTTCT 537 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || || | ||| ||| || | ||| | |||| | Sbjct 538 TAGGATTCACTCCCTG---TGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTT 594 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || || ||||| |||||||||| || ||||| | ||| | | | ||||||| Sbjct 595 CCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACC 654 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || ||||| || || || ||||| | || || | || | | ||||| || | Sbjct 655 AGGCTCCTTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGC 714 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 |||| | || || ||||| || || | || || ||| ||||||||||| Sbjct 715 CGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAACTCGTATT 774 Query 96418 TTTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCAATTCCTTTAATAGAATG 96476 | ||||| | | || || || ||| || | |||| | || ||||| || | | | | Sbjct 775 TCTTGCCATTCTT-AGCTGAAAGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTT 833 Query 96477 TTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTC-GGGTTGGCGCCTTTACCGCC 96535 || ||| | || ||| | | ||||| ||| ||||| || |||||||| || Sbjct 834 ACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTACCACC 889 Query 96536 CGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCT 96595 ||||| ||||| ||||| || || || ||||| |||||||| | | ||| || | Sbjct 890 AGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAACTCCTT 949 Query 96596 GACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATA----GAACGGGT 96651 || || | ||||| || | | | | | || || ||| | ||| || | Sbjct 950 TACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT-CAACTAAAAAGAAGAAAGGAT 1005 Query 96652 CGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGG 96711 ||| || ||||| || || || || || ||||| || | | || || |||| Sbjct 1006 CGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTA 1065 Query 96712 CCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTT 96771 | ||| || || ||||||||||||||||||||||||||||| | ||||| || |||| Sbjct 1066 GTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTT 1125 Query 96772 GCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCT 96831 | |||||||||| ||| ||||| || ||||| || | ||||| || || |||||| Sbjct 1126 GTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGC 1185 Query 96832 GGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGC 96891 || || |||||||| |||| ||||| || || ||| | | || || | || Sbjct 1186 TACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTATGC 1245 Query 96892 CGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCA 96951 |||| ||||| |||||||| ||||| || || | |||||| | | || || | || | Sbjct 1246 CGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGGTA 1305 Query 96952 CTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 ||||| || || || | | ||| || |||||||| || || || || Sbjct 1306 TACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGC 1357 >seq72952 Length=1956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||| | ||| || || || |||||||| || || || || | Sbjct 1248 CCACCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 1307 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||| || ||| ||||||||| ||||||||| || Sbjct 1308 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1367 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || ||||| |||||| | | | |||||| || || Sbjct 1368 ATACCTTCTTTGTCTTGGATCTTTGC--CTTCACGTTTTCAATAGTGTCAGATGGTTCTA 1425 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||||||||| || || || || ||||| ||||||||| Sbjct 1426 CCTCTAGGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| || || |||||||| || || || ||||| || | | Sbjct 564 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGAC 623 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||||||| || || ||| |||| || ||||||||||| || Sbjct 624 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGA 683 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || |||| |||||| | | | ||||| || || | Sbjct 684 ATGCCTTCCTTATCCTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACT 743 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| ||||| || | ||||| ||||| || ||||| Sbjct 744 TCCAGGGTAATGGTCTTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||||| || || || ||||| ||||||||||| | | || | || Sbjct 1719 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCT 1778 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| |||||||| ||||||| || ||||| || ||| | ||| |||||||| Sbjct 1779 TCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCT 1838 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||||| || || ||| | || || ||| Sbjct 1839 TGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAATTGTT 1898 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| |||||||| ||||| Sbjct 1899 TTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403822412297530