Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq42954 504 9e-138 seq181590 95.1 2e-14 seq188143 89.7 6e-13 >seq42954 Length=2876 Score = 504 bits (558), Expect = 9e-138 Identities = 1098/1622 (68%), Gaps = 45/1622 (3%) Strand=Plus/Plus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 522 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 581 Query 61892 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 61951 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 582 TACATTCCTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 641 Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 642 TAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTA 701 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62070 || || ||||| | ||| || || ||| ||| ||||| | ||||| || || || Sbjct 702 TCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 761 Query 62071 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 62127 |||| | |||| || | ||| | |||| | || |||||| | ||||| Sbjct 762 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 820 Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCG-GTTAAAACTCTAAGGAGATGCGGAT 62186 ||| || || || |||| |||||| | |||| || ||| | | || ||||| | | Sbjct 821 ATTTTTCATATCTTCATCCCATAAATCAG-CTCGAGTCAAATCAGTCAGAAGATGATGGT 879 Query 62187 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62246 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 880 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 939 Query 62247 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 | | ||| ||| | || || | |||||| ||||| || ||||||||||||||||| | || Sbjct 940 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCA 999 Query 62307 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 ||| | ||| | | ||| ||||| || || || ||||| || ||| | ||| Sbjct 1000 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCA 1057 Query 62365 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62423 ||| || | || || || ||||| | || || | || Sbjct 1058 AAGGTCTGTAGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACT 1117 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 |||| |||||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1118 -TCCTTGATATGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1176 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 |||| |||||||| ||||| || || | | ||| || | |||| | || || Sbjct 1177 CACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1236 Query 62544 ATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | || || | | | | | ||| | ||||| | || |||||||||||||||| ||| Sbjct 1237 AAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGACAGGA 1295 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 | || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1296 CGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1355 Query 62663 TTATTGAGATTTCTGA----CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62718 || || | ||| |||| |||| ||| | | || || | ||| ||||| ||| Sbjct 1356 TTGTTTAAATT-CTGAGTCACAAT--CTTAGTG-ATTTCTTTTAATTTTTTAAAATTAAA 1411 Query 62719 TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 ||| || | ||||||||||| | ||| | || || || || || || || || || Sbjct 1412 TCGATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 1471 Query 62779 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 62835 || | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1472 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 1528 Query 62836 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 62895 | ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||| Sbjct 1529 AAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATACAACATATATGGTGTACC 1588 Query 62896 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 62955 ||| || | |||| ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1589 AGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTC--GTTTT 1646 Query 62956 GTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 || | ||| |||| || ||| | ||| | | |||||| || ||||| || Sbjct 1647 ATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCCGTAACAG 1706 Query 63014 TTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | | || |||||||| |||| |||||||| | ||| ||| |||||||| || Sbjct 1707 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCT 1763 Query 63074 ---CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| | Sbjct 1764 ACCCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATT 1823 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 || || || ||||| |||||||| | ||| | |||| | | || || | |||||| || Sbjct 1824 TCTTCCTTACCTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGC 1883 Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250 || ||||| || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 1884 TCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCA 1943 Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAG 63310 || || || || |||||||||||||| | | |||||| || ||||| || || | Sbjct 1944 GTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCT 2003 Query 63311 ATATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 ||||| || ||| | ||| || || || || |||||| || || || | Sbjct 2004 ATATAAGACCCCTGGGCTCTAATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGAT 2060 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 ||||| |||||||| ||| ||||||| ||||| | || || || |||||||| || || Sbjct 2061 TTAGAAATTAATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTC 2120 Query 63428 AT 63429 || Sbjct 2121 AT 2122 Score = 105 bits (116), Expect = 8e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| |||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2583 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2642 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2643 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2693 >seq181590 Length=632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 603 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 544 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 543 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 484 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 483 GTTACACCAGAATATATGCC 464 >seq188143 Length=771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 ||||||| || |||||||| | |||||||| ||||| || || ||||| ||||| | | Sbjct 481 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTGTACATCTGC 540 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 || ||||| ||||||||||||| || ||||| |||| Sbjct 541 CATATGTCTGGATATTGAATTGGGAATATAACGAATC 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631601629221200