Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12094 156 5e-33 seq188143 143 3e-29 seq20113 125 8e-24 seq157178 89.7 6e-13 >seq12094 Length=2216 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||||||||| ||||| || || | || |||||||| || | |||||||||||||||| Sbjct 410 TCATTGCTGAAAGTTAATCCGGGCATCAAGCCTCGTTTTTTCAACCAAAATATTGAAGCA 351 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || || |||||||| || || || || ||||| || | ||||||||| |||| Sbjct 350 AAGCTGCCTGAGAAAAATATTCCCTCAACCGCCGCAAAAGCGATAATACGTTCTCCAAAT 291 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || | || |||| |||||| | ||| ||||| || || || ||||||||||| ||| Sbjct 290 GTGGCAGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAATACATGGT 231 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || || || || || || || | | |||| Sbjct 230 AGAGTCTCAATTGCATTGAACAAGAAATC 202 >seq188143 Length=771 Score = 143 bits (158), Expect = 3e-29 Identities = 111/132 (84%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || |||||||| ||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct 490 TCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTGTACATCTGCCATATGTCT 549 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 ||||||||||||| ||||| || || || ||||||| ||| | | | ||||| ||| Sbjct 550 GGATATTGAATTGGGAATATAACGAATCGTCTAGGGTTTTCTCTCAACAGAGGCTCAAGT 609 Query 93710 TGTGGGTCAAAC 93721 |||||||||||| Sbjct 610 TGTGGGTCAAAC 621 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || || ||||| ||||| ||||| |||||||| || || ||||| || || ||||| || Sbjct 169 ATCTCCGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTC 228 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || || ||||| || || | ||| || | || ||||| || |||||||| || || Sbjct 229 ACTTGAACCTCTTGCGAGAAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCC 288 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 ||||| || || || | ||| || |||||||||||||| |||||| | | |||||| Sbjct 289 GCAAAGAATGCTAAGACATGTTTGATAAAATGTTTCTCGCAATCTTTTAATGTCTCCCAA 348 Query 93569 TC 93570 || Sbjct 349 TC 350 >seq20113 Length=2769 Score = 125 bits (138), Expect = 8e-24 Identities = 78/83 (94%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 620 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 561 Query 126323 GTGGGTTCGAACCCCACACCTGA 126345 ||||||||||||||||||||||| Sbjct 560 GTGGGTTCGAACCCCACACCTGA 538 >seq157178 Length=885 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/125 (76%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| || |||||||||| ||||| |||||||| | || | | ||| || || || Sbjct 444 TTAAAATTCTGCATCTAAAGTAAACACATTGTCCATAGGTTGCGC---CATCACTCCCCA 500 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||||||||| |||||||| || |||||||| ||||| || |||||||| || || Sbjct 501 CTTTTGGTATTCTCCAACTTTCTTCTCAAAGAAGTTTGTTTTGCCTTCCAATGAGATGAG 560 Query 92862 ATTCA 92866 ||||| Sbjct 561 ATTCA 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555076430056280