Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq284 152 4e-32 seq86953 100 2e-16 seq6456 84.2 2e-11 >seq284 Length=9844 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4902 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 4843 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 4842 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 4805 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4902 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 4843 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 4842 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 4805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 4964 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 4913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 4964 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 4913 >seq86953 Length=1668 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || ||||| ||| |||||| | |||||||| ||||| ||| ||||| ||||||||| Sbjct 1407 ACACACGACGACTTATGGAACTCAGCTCAAATACAGCTGGTGAAAGAGGGCAAGATGCAT 1466 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC- 37945 | | | |||||||| ||||||||||| |||||||||||| | | | || | || Sbjct 1467 GGTTTTCTACGCATGTACTGGTGCAAGAAGATTTTGGAATGGACCCA-GTCGCCCGAACA 1525 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | || || || ||||| | |||||| | ||||| | ||||| | ||||| || Sbjct 1526 GGCTTTGAAGTATGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCTAA 1585 Query 38006 CGGTTACGTCGG 38017 ||||| || || Sbjct 1586 TGGTTATGTTGG 1597 >seq6456 Length=2491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| ||||| || | ||| | || ||||||||||| ||||| |||| | Sbjct 1669 CCACCTCTCAGACGCAGAACTAAATGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGAC 1728 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || || | ||||| || ||||| || || | |||||||| || Sbjct 1729 AGTGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 1788 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | || |||||| ||| ||||||| ||||| | | || |||||| || ||| Sbjct 1789 ATGCCCTCTTTATCCTGAATTTTTGCCTTAA---CATTTTCAATTGTATCAGAAGCTTCC 1845 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || || || || ||||| || ||||| ||||||||| Sbjct 1846 ACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 1896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395821886110294