Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6456 127 5e-24 seq72952 125 2e-23 >seq6456 Length=2491 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| ||||| | || | || ||| ||||| ||||| ||||| | Sbjct 984 TCCACCTCTCAGTCTTAGTACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGA 1043 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | |||||||||||| || || || | |||||| ||||| Sbjct 1044 CAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTG---GTCTGG 1100 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| ||||| || ||||| ||||| || ||||| || | ||| | || Sbjct 1101 GGGAATCCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTC 1160 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || ||||| ||||| || || || || || || |||||| Sbjct 1161 AACTTCAAGAGTAATAGTCTTGCCGGTAAGTGTTTTCACAAAAATTTGCATT 1212 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||||||||| | || |||||||| ||||| | |||||||||||| || Sbjct 1476 TTCTTTTTGTATATTATAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAA 1535 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||||| | || || |||||||||||||| || || || || || || Sbjct 1536 AATAAGCCTTTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTAACATT 1595 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | || || || || || ||||| || || || Sbjct 1596 TTCGATTGTGTCAGAAGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAAC 1655 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1656 AAAAATTTGCAT 1667 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||||| || || | || ||| || || ||||| ||||| | Sbjct 2124 TCCACCTCTCAGCCGTAGTACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGA 2183 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | || ||||| || || || || | || ||| ||||| Sbjct 2184 TAGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 2240 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || ||||||||||| ||||| || || || ||||| || | ||| | ||| Sbjct 2241 GGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTC 2300 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || ||||| ||||| || || || |||||| Sbjct 2301 CACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 2352 Score = 107 bits (118), Expect = 5e-18 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||| | || || ||||| ||||| | || ||||| || || Sbjct 1704 TTCCTTCTGAATATTGTAGTCTGACAGTGTACGTCCATCTTCGAGCTGCTTTCCAGCAAA 1763 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | || ||| |||||| || || ||||||||||| ||||| || || || Sbjct 1764 AATAAGTCTTTGCTGA---TCTGGGGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAAC 1820 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1821 ATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTT 1880 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1881 TACAAAAATTTGCATT 1896 >seq72952 Length=1956 Score = 125 bits (138), Expect = 2e-23 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | || || || || ||||| | ||||||||| || || Sbjct 1283 TTCCTTTTGAATATTATAATCAGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAA 1342 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | |||||| |||||| || |||||||| || ||||| || || ||||| Sbjct 1343 AATAAGCCTCTGTTGG---TCTGGGGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCAC 1399 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || | |||||| || || ||||| || || || || |||||||| Sbjct 1400 GTTTTCAATAGTGTCAGATGGTTCTACCTCTAGGGTGATGGTTTTTCCTGTAAGAGTCTT 1459 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 1460 AACAAAGATCTGCATT 1475 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| | |||| ||| ||||| |||||||| || || | | ||||| || ||| Sbjct 579 AGTACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 638 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || ||||| || || || || || ||||||||||| |||||| || ||||| ||| Sbjct 639 TCCAATTGCTTACCAGCAAAAATGAGACGCTGTTG---GTCTGGGGGAATGCCTTCCTTA 695 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||| ||||| || ||||| || || || | || | ||||||||| || || || Sbjct 696 TCCTGTATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATG 755 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || | || || || ||||| ||||| Sbjct 756 GTCTTTCCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| | ||| | || |||||||||||| || ||||| | || || || || || Sbjct 1718 AAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATC 1777 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| ||||| || || ||||| || ||||| ||||| |||| || || |||||||| Sbjct 1778 TTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTG---ATCTGGAGGAATGCCTTCTTT 1834 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || |||||||| || || || ||||| || | || | ||||||||| | || || Sbjct 1835 GTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAAT 1894 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || || ||||| Sbjct 1895 TGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175779888898266