Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15400 159 3e-34 seq6456 127 2e-24 seq72952 100 3e-16 >seq15400 Length=3181 Score = 159 bits (176), Expect = 3e-34 Identities = 403/601 (67%), Gaps = 20/601 (3%) Strand=Plus/Minus Query 22220 GTCGTCGCCGATACGGACGGTTCGCATTTGGCGCCTCTCGCGTACGACTATTTTGA--AA 22277 ||||| |||||||| || || ||||| | ||||| | || || ||| || || Sbjct 1456 GTCGTGGCCGATACTGATGGAAGTCATTTACCTCCTCTGGAATAT-AC-ATTGGGAGAAA 1399 Query 22278 ACAACAAGCGTTTCAAG-ACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGG 22336 | || || | |||||| | |||| | ||| |||| | || ||| || || || ||| Sbjct 1398 AAAATAAACCATTCAAGCAAACATCTGGA-AAAGTTGTGGGCGCCTACTTCGTAGAATGG 1340 Query 22337 GGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTG 22396 || || || | | | | || |||| || | || | || || || | |||||| Sbjct 1339 GGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCATTTG 1280 Query 22397 CTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTG 22456 ||||| || || | || || |||||||| |||||||| || ||| | | ||| | | Sbjct 1279 CTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAATGACAGCTTAAAAGAGATC 1220 Query 22457 CCGGGAAGCTTCGAGGCGTTGCAACGGTCGTG---CGTCAATAGAGCCGATTTCAAGGTG 22513 || || ||| | || |||||||||| || || | | ||| || ||||| || Sbjct 1219 GAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCCGT-GAG--GACTTCAAAGTC 1163 Query 22514 ACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAAC 22573 | || |||||||| ||||| || |||||||||| |||||||| |||| || |||||| Sbjct 1162 TCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGAAC 1103 Query 22574 GAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTC 22633 || || ||||||||||||||||| ||||| ||| || | ||| ||| ||| | | Sbjct 1102 GAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAATTG 1043 Query 22634 AAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCACGAC 22693 || | | | ||||| || || |||||| | ||||||| || | | | ||| Sbjct 1042 AAGATTCTTCCCTCGATTGGTGGGTGGACGCTTGCCGATCCTTTCTTCTTTTTAGTTGAC 983 Query 22694 AAGAACGTGAGACAA----ATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAA 22749 | || | ||| || |||| | | || || | |||| | | | || ||||| Sbjct 982 A--AATCTAAGAGAACACGATTT--GTGCAGTCAGTAAAGGAGTTTCTCCTAACATGGAA 927 Query 22750 GTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTAA 22809 ||||| || || || ||||| |||||||||||||| || || || || || || ||| | Sbjct 926 ATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAAAGGTGCTAACCCTGA 867 Query 22810 C 22810 | Sbjct 866 C 866 >seq6456 Length=2491 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || ||||| || || || | ||||| || ||||||||||| ||||| Sbjct 1212 TCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGA 1271 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| |||| |||||| || ||| | |||| | ||| || || ||||| Sbjct 1272 CAGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGG 1331 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| ||| ||| || ||| | | ||| | || || | | || | Sbjct 1332 AATGCCTTCCTTGTCC-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 1390 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||||| ||||| |||||||||||||| ||||| Sbjct 1391 CTTCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | ||||||||||| || | || || || || |||||||| ||||| Sbjct 1896 TCCACCCCTAAGACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGA 1955 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| ||| ||| ||||||||||| || || | || | | ||| || |||||||| Sbjct 1956 CAGCGTACGACCATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGG 2015 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || |||| | ||| ||| || ||| | | ||| | || || | | || | Sbjct 2016 AATCCCTTCTTTGT-CTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 2074 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||||| ||||| || ||||||||||| ||||| Sbjct 2075 CTTCTAATGTAATTGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || ||||||| ||||| || || ||||||||||| || || || || | Sbjct 1681 CGCAGAACTAAATGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGACAGTGTACGTCCA 1740 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| |||||||| | || | || |||||||| || || |||||||| || Sbjct 1741 TCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTA 1800 Query 127019 TCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| || ||| | | ||| | || || | | || ||||| | || | Sbjct 1801 TCC-TGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGAT 1859 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || ||||||||||| ||||| Sbjct 1860 AGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 1895 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || ||||||||||| || | || || ||| || ||||| |||||| Sbjct 2155 GTAGATTCCTTCTGAATATTGTAGTCAGATAGTGTACGTCCATCTTCAAGCTGCTTTCCA 2214 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || | || | || |||||||| || || |||||||| || ||| ||| ||| || ||| Sbjct 2215 GCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCC-TGAATTTTTGCCTT 2273 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | || || | | || ||||| | || | || ||||| ||||| || Sbjct 2274 AACATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTCAGTGT 2333 Query 127096 TTTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 2334 CTTTACAAAAATTTGCAT 2351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || |||||||||||||| || || ||||| ||| || Sbjct 1003 ACCAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCA 1062 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||| || | || | | ||| || || || || || || ||||| | | || Sbjct 1063 AGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCTTCCTTAT-CTTG 1121 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| ||| || | | ||| | || || | | ||| ||||| | || | || || Sbjct 1122 AATTTTTGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTT 1181 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || ||||| |||||||| ||||| Sbjct 1182 GCCGGTAAGTGTTTTCACAAAAATTTGCAT 1211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| |||||||||||||| | || || ||| || || || || || Sbjct 787 GTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCGTCCATCTTCAAGTTGCTTACCG 846 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || | ||||| | ||| || || || || ||||| || |||||| ||| ||| || ||| Sbjct 847 GCAAAAATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCC-TGAATTTTTGCCTT 905 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | || || | | || ||||| | || | |||||||| ||||| || Sbjct 906 AACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGT 965 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || ||||| ||||| Sbjct 966 TTTCACGAAAATTTGCAT 983 >seq72952 Length=1956 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || || ||||| || | ||||| ||||||||||| |||||||| Sbjct 1475 TCCACCACGAAGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGA 1534 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || | || || ||||| |||| | ||||||||||| || || Sbjct 1535 AAGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 1594 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| ||||| |||||| || | | ||| | || || | || || Sbjct 1595 GATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 1654 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 1655 TTCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||| |||| || | || || ||||||||||||||||| || Sbjct 1020 CCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGAT 1079 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | || || ||||| |||| | || || ||||| ||||| Sbjct 1080 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGA 1139 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| ||||| ||| | | ||| | ||||| | || ||| Sbjct 1140 ATGCCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACT 1199 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 1200 TCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || ||||||| ||||| || ||||||||||| ||||| Sbjct 1248 CCACCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGAT 1307 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || ||||||||||| | || | | ||| || || || || Sbjct 1308 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 1367 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||| || ||| | | ||| | ||||| | || || Sbjct 1368 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCAGATGGTTCTACC 1427 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 1428 TCTAGGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || ||||| || | || |||||||| ||||||||||| || | || ||| | Sbjct 348 CGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCA 407 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | || | || || ||||| || || || ||||| ||| Sbjct 408 TCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCTTTG 467 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || || | | ||| | ||||| | || ||||| | || | Sbjct 468 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCACTTCTAATGTGATA 527 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || |||||||| |||||||| Sbjct 528 GTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473977134955280