Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq15400 250 2e-61 seq72952 107 1e-18 seq6456 102 6e-17 >seq15400 Length=3181 Score = 250 bits (276), Expect = 2e-61 Identities = 852/1306 (65%), Gaps = 44/1306 (3%) Strand=Plus/Plus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 || || | ||| ||||||| ||||| | |||||||||||||| ||||| |||||||| Sbjct 168 TTACCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAA 227 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 ||||| | |||||| | || || | ||||| ||||| ||| | | || ||| | Sbjct 228 GCAAAGAGACCACCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGATCTA 287 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | ||||| || || || | || | | || || |||| || |||| ||| || Sbjct 288 GCATTGTCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGGGCG 347 Query 5991 ATGTTATCATA--GAATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTATA 6043 | || || || ||| | ||||| | | | | | |||| |||| || | || Sbjct 348 ACATTGTCGTAATGAAATTCCCACTTGCCTTG-AGCAATTTCATTCGCAATCTCCCTGTA 406 Query 6044 ATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGG 6103 || | || ||| || ||| |||||||| || || | |||| | ||||| || || Sbjct 407 GTCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGG 466 Query 6104 ATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTA 6162 | | |||| |||| | || ||| || || |||| || || |||||||| || ||||||| Sbjct 467 AATGTTGTCTTCGTAATC-ATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTA 525 Query 6163 CTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGTT 6221 ||| | || | | || || || ||||| | | ||| | | || | | | Sbjct 526 ATACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTC-CGAAGTCAGAT 584 Query 6222 GTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTT 6281 |||||| |||| || | ||| | ||| ||||| | ||||||||| || | | | Sbjct 585 GTGTAAGTTTCCTTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTA 644 Query 6282 TCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGT 6341 || | ||||| || ||||| || || || |||| | || |||| ||| | ||| | Sbjct 645 TCATTTGACCAGGCTCCTTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTT 704 Query 6342 TGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTT 6401 || || | || || ||||| | |||||| || | || | | ||||| ||| Sbjct 705 TGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTC 764 Query 6402 AGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTT 6461 | | || || || |||| | | | | |||||| || ||||| || || Sbjct 765 AACTCGTATTTCTTGCCATTCTTAGCTGAAAGCTCATCGAGCATCTCACGTAATTCTTTC 824 Query 6462 AAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCT 6521 | | || ||| | | ||| ||| | | || || ||||| |||||| Sbjct 825 ATCAAACTTACATAACAATCACCATCTTCTGG---GCTACCGAGGTCAGGGTTAGCACCT 881 Query 6522 TTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAA 6581 ||||| || |||||||||||||| || || || || ||||| |||||||| ||| | | Sbjct 882 TTACCACCAGGAAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGA 941 Query 6582 AATTCGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTAA 6638 || || || | ||||| ||| || | || || ||| ||| | | Sbjct 942 AACTCCTTTACTGACTGCACAAATCGTGTTC---TCTTAGATTTGTCAACTAAAAAGAAG 998 Query 6639 AACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGG 6698 || |||||| ||||||||| || || ||||| || | || | || || || | || Sbjct 999 AAAGGATCGGCAAGCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGG---GCGG 1055 Query 6699 CGCTTGATC----GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTC 6754 ||||| | | |||||| || |||||||| |||||||| || ||||| | | Sbjct 1056 -GCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAA-- 1112 Query 6755 GACA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAA 6812 |||| ||||||||||||||||| | ||| ||||| ||| || || | |||||||| Sbjct 1113 GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAG 1172 Query 6813 TCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTT 6871 || | |||||| || || ||||| || | |||| || | || | || || Sbjct 1173 TCCTCACGGCCGCTACAGGACCGTTGCAGTGCTTGGAAACTGCCTTCG-ATCTCTT--TT 1229 Query 6872 AAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGT 6931 |||| || |||| || || ||||| ||||| || ||||| || || | |||||| || Sbjct 1230 AAGCTG-TCATTTATGCCGTCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGT 1288 Query 6932 AAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCAC 6991 ||||||||| || || || || |||| ||| ||| || ||||||||||| || Sbjct 1289 AAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTAC 1348 Query 6992 AAAGTAAGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTCCGACCA 7051 ||||| ||||||||||| || | | ||| | ||| ||| ||| ||||| | | Sbjct 1349 GAAGTAGGCGCCCACAACTTTTCCAGATGTTTGCTTGAATGGTTTATTTTTTTCTCCCAA 1408 Query 7052 CATATATTTTATAGGATTTAAATGCGAACCGTCTGTATCGGCCACG 7097 |||||| | |||| |||||| || || |||||||||||| Sbjct 1409 TGTATATTCCAGAGGAGGTAAATGACTTCCATCAGTATCGGCCACG 1454 >seq72952 Length=1956 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||||||||||| || | ||| ||||||||| ||||| || || | Sbjct 1020 CCTCCTCGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGAT 1079 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||||||| || || |||| || | ||| || ||||| | || Sbjct 1080 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGA 1139 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| || | | | | |||||| | | ||| || Sbjct 1140 ATGCCTTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACT 1199 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||||||| || || | ||||| || || || ||||| Sbjct 1200 TCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| ||||| ||||||||||| ||||||||| || || || || | Sbjct 1704 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG-- 1761 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||||||| || || | ||||| | ||| || ||||| | | Sbjct 1762 AAAGTGTACGACCATCTTCCAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAG 1821 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||||||||| ||||| || | | | | |||||| | | ||| | Sbjct 1822 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTA 1881 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||||||||||||| || || | ||||| || || || ||||| Sbjct 1882 CTTCTAAAGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1930 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | |||||| || | ||| ||||||||| || || ||||| | Sbjct 1476 CCACCACGAAGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 1535 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||||||| || || |||| || | |||||||||||| | || Sbjct 1536 AGAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1595 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| ||| | | | | || || | | |||||| Sbjct 1596 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1655 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || || |||| ||||| || || |||||||| Sbjct 1656 TCTAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| | |||||| ||||||||| ||||| || ||||| || || | Sbjct 336 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 395 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||||| ||| || ||||| | ||| Sbjct 396 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGGGA 455 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||||| | |||||| Sbjct 456 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCACT 515 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 516 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 >seq6456 Length=2491 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| || || |||||||| ||| ||||| ||||||||||| | || | |||| | Sbjct 1224 ACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGACAGAGTGCGTCC 1283 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || || ||||| ||| | ||||| | | ||| || || | || | |||||| || Sbjct 1284 ATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTT 1343 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| |||| | ||| ||| || | |||||| ||||| || || Sbjct 1344 GTCCTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGAT 1403 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | |||||||| || || ||||| Sbjct 1404 AGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| || || |||||||| |||||||||||||||||| || | || |||| | Sbjct 1452 ACGCAACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGACAGTGTGCGTCC 1511 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | |||||| || ||||||| | | || || || | || | ||||||||| Sbjct 1512 ATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGAATGCCTTCTTT 1571 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || || ||| |||| | | | |||||| | |||||| || |||||||| Sbjct 1572 ATCCTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAAGTAAT 1631 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||||| || || || ||||| Sbjct 1632 AGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| ||||| |||||||| ||| || || ||||||||||| | || || | Sbjct 1908 ACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGACAGCGTACGACC 1967 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | |||||||| ||||||| | | ||| || || | || | |||||||| Sbjct 1968 ATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGAATCCCTTCTTT 2027 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| |||| | ||| ||| || | |||||| || || ||||| Sbjct 2028 GTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCTAATGTAAT 2087 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || | || ||||| || || ||||| Sbjct 2088 TGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||| ||||| | || ||| |||| || | ||| || ||| |||| Sbjct 792 TTCTTTCTGAATATTGTAATCAGATAATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAA 851 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| || | ||| || || | ||| | |||||||||||| |||||| |||| | Sbjct 852 AATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTAACATT 911 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| ||| || | ||| || ||||| || || ||||| || || | ||||| || Sbjct 912 TTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCAC 971 Query 39708 GAAGATCTGCAT 39719 ||| || ||||| Sbjct 972 GAAAATTTGCAT 983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346284337800251