Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq42954 104 3e-17 >seq42954 Length=2876 Score = 104 bits (114), Expect = 3e-17 Identities = 894/1438 (62%), Gaps = 59/1438 (4%) Strand=Plus/Minus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || || ||||| | ||| | ||| | || || || ||||| ||||| |||||| Sbjct 2296 GAAAGACCTCAACACATGCTTATGAGAGTCTCCATAGGCATTCATGGTGAAGACATTGAT 2237 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAAC 111724 || | | || || | | |||||| | ||| || | || |||| || || Sbjct 2236 AGTGCAATCAATACTTATAATATGATGTCAGAGAAATATTTT-ACACATGCAAGCCCTAC 2178 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 || ||| |||| |||||| | || || | ||| || |||||||| || | || Sbjct 2177 ACTGTTCTCAGCTGCTACACCGCGGCCACAGCTTTCCTCCTGCTTCCTTATAGCTATGAA 2118 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 || ||| || | || |||| || ||| | | ||||||| ||| || || | Sbjct 2117 AGACGATAGTATTGAAGGTATTTTCGATACTTTAAAACAATGTGCATTAATTTCTAAATC 2058 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 || ||||| || || | || | ||| | |||||| | |||| ||| || Sbjct 2057 TGCCGGTGGCATAGGTTTACATACACATTGCATTAGAGCCCAGGGGTCTTATATAGCTGG 1998 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 || ||||| ||| ||||| | | |||||| | | || | ||| || || | Sbjct 1997 CACTAATGGGGTTTCAAATGGTCTAGTGCCAATGTTGAGAGTGTACAACAATACTGCCAG 1938 Query 111965 CTATGTAAACCAAGCTGGG------CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCC 112018 |||||| | |||| ||| |||| | | || | ||| | || | ||||| Sbjct 1937 ATATGTAGATCAAGGTGGAAACAAACGTCCCGGTGCATTT---GCAATTTACTTAGAGCC 1881 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 ||||| ||||| || | |||||| | || || ||| |||| | || || Sbjct 1880 TTGGCATGCGGACATATTTGAGTTCTTAGATTTAAAAAAGAACACAGGTAAGGAAGAAAT 1821 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 | | | || || || | ||| | ||||| |||||||| || ||||| || || || Sbjct 1820 GAGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGATCTGTTTATGAAAAGGGTAGA 1761 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 || || ||||| |||| | ||||| | | || || ||| | || | || Sbjct 1760 AAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTGTCCTGGCCTCGCTGA--CTGT 1703 Query 112199 G--GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG 112256 || ||||| || ||||| || || | || || || ||||||| ||| | | Sbjct 1702 TACGGAGAGGAATTCGAAGCACTATATGCCAAATATGAAGAAGAAAAACGGTTTA-TAAA 1644 Query 112257 ACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 ||| || |||| || | ||||| | ||| | | ||||| ||||||||||| Sbjct 1643 ACGAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCTCAAGTGGAGACTGGTAC 1584 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 |||||||||| | || || || || || ||| |||||||||||||| ||| | || Sbjct 1583 ACCATATATGTTGTATAAGGATGCTTGCAACAGGAAGAGTAATCAAAAAAATCTTGGCAC 1524 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 || || || ||| || || || || | || ||| || ||||||| ||| Sbjct 1523 TATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAAGATGAAGTGGC 1464 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 ||||| ||||| || || || || || || || ||| || | || ||| Sbjct 1463 AGTGTGCAACCTTGCTTCCATAGCACTTAACATGTTTGT------TGAAAATAATCGATT 1410 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 | ||| | ||||| | | ||| | || || | ||| || | || |||||| ||| || Sbjct 1409 TAATTTTAAAAAATTAAAAGAAATCACTAAGATTGTGACTCAGAATTTAAACAAAGTCAT 1350 Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||| || ||||| || || ||| || | || |||||||| |||||||| Sbjct 1349 TGATGTTAACTTTTATCCTGTCCCTGA---AGCAAAAACTTCAAATATGAGGCACCGTCC 1293 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 | ||| | ||||| || ||| | || ||| ||| | ||| | | | | Sbjct 1292 TGTCGGTATTGGTGTTCAGGGTATGGCAGATACATT-----TGTGTTGATGAG-AATACC 1239 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGT----------ATATTTGAGACAATGTATC 112722 || ||| ||| || |||| |||| | | | |||||||| ||||| ||| Sbjct 1238 TTACGA--AAGTGA--GAAAGCAATACTCCTTAATCAACAAATATTTGAAACAATTTATT 1183 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 | | || | || || |||| || || ||||| || ||| |||| || | | Sbjct 1182 ATGGTGCATTAGAAGCTAGTTGTGAATTAGCAGAAAAAGAAGGTGCATACAGCACATATC 1123 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG---GAAGGTGAGACCA 112839 | || ||||||| ||||| | || || | |||||||||| || | || Sbjct 1122 AAGGAAGTCCAGCTAGCCAAGGTATCCTCCAGTATGATATGTGGAACAAAACTCCTACAG 1063 Query 112840 AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 112897 | ||| | |||||| | ||||| ||| || ||| | | ||| | || || Sbjct 1062 ACCTT---TGGGACTGGACTGTCCTCAAAGAAAAGATAGCAA--AACATGGTTTGCGCAA 1008 Query 112898 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 112957 ||| ||||| ||||| ||||| || ||||| || |||||||| | || || | ||| Sbjct 1007 TTCTCTATTGATAGCACCTATGCCGACTGCCTCTACTGCACAAATTCTTGGCAACACTGA 948 Query 112958 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || |||||||| | || | || || || | |||||| | | | ||||| ||| Sbjct 947 ATCTTTTGAACCATTTACATCAAATATTTACCAAAGAAGAGTCTTATCTGGAGAATTT 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618753331849840