Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq42954 531 6e-146 seq188143 114 1e-20 >seq42954 Length=2876 Score = 531 bits (588), Expect = 6e-146 Identities = 1189/1786 (67%), Gaps = 39/1786 (2%) Strand=Plus/Plus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || |||||||||| ||| | ||| |||| |||||| ||||| || ||||| | Sbjct 529 CTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTC 588 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | || |||||||| | |||| | | |||||| || |||| ||| ||| ||| Sbjct 589 CTGTTTTTAAACCCATCTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAG 648 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 ||| | || ||| || |||| ||||||||| || || |||||||| ||||||||||||| Sbjct 649 GTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAATGCTCCTCTATCAGCTG 708 Query 47152 CCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 |||| | || | ||| ||| ||||||||||| ||||| || | | | | || Sbjct 709 CCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT 766 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 |||| |||| || | | | ||| |||||||| ||| | |||||| ||||| Sbjct 767 TTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTT 826 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | || | ||| | | | ||| || | | ||||||| | || || | Sbjct 827 CATATCTTCATCCCATAAATCAGCTCGAGTCAAATCAGTCAGAAGATGATGGTTCACTAC 886 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||||||||||||||| ||||| | || ||||| |||| ||||||| | ||| Sbjct 887 AGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTCAAAAGA 946 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 |||| | || |||| |||||| ||||| || || || ||||| | ||| | |||| Sbjct 947 TTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGTGCTATCAATAGAGA 1006 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||| | | |||| |||| ||||| |||| |||||||| |||| Sbjct 1007 ATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGTCCAGTCCCAAAGGTCTGT 1066 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| ||||| | |||||| || || || |||| || ||| || | ||| Sbjct 1067 AGGAGTTTTGTTCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATA 1126 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||| | || | ||| | | || || | ||||||||| ||||| ||||||| |||||| Sbjct 1127 TGTGCTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATA 1186 Query 47627 TATTGTTTCAAATATTTTTATGTTTA--GATTCCTTGCTT-CTGATGATTCAAAAGGATA 47683 |||||||||||||||| | || ||| || | |||||| || | ||| |||| Sbjct 1187 AATTGTTTCAAATATTTGT-TGATTAAGGAGTA-TTGCTTTCTCACT-TTCGTAAGGTAT 1243 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 ||||||||||||| || |||||||||||||| | || | || | Sbjct 1244 TCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGACAGGACGGTGCCT 1303 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| ||| | ||||| || | ||||| ||| | ||| || | ||| |||| Sbjct 1304 CATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAA 1363 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTAT 47863 | |||||| ||||||| ||||||| ||| |||||| Sbjct 1364 ATTCTGAGTCACAATCTTAGTGATTTCTTTTAATTTTTTAAAATTAAATCGATTATTTTC 1423 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| | ||||||||||| || || || || || || || || |||| | ||| Sbjct 1424 AACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGT 1483 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | | |||| || ||||| | |||||| ||||| || | ||||| ||||| Sbjct 1484 GTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATT 1543 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | |||| || || ||||| || | |||| | ||||| ||||| || | |||| Sbjct 1544 ACTCTTCCTGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGC 1603 Query 48044 TTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTA---- 48098 ||| || || || ||||| | | || | ||| | | || | ||||| | Sbjct 1604 TTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGA--------CTCGTTTTATAAACCG 1654 Query 48099 ----TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTA 48153 || | ||| ||||| | ||||| || ||||| || || || ||| | | | | Sbjct 1655 TTTTTCTTCTTCATATTTGGCATATAGTGCTTCGAATTCCTCTCCGTA-ACAGTCAGCGA 1713 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 |||||||| |||| ||||||||| | |||||| ||||| |||| ||| || ||| Sbjct 1714 GGCCAGGACAATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACCCTTTTCA 1773 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 |||| | |||||||||||| | ||| ||| | || |||| ||| | |||||| || | Sbjct 1774 TAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTAC 1833 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | | ||| |||| | || | || || | ||| || |||||||| || ||||| || | Sbjct 1834 CTGTGTTCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAA 1893 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 |||| | | |||| || ||||| || || |||||||||| |||||||||||||||||| | Sbjct 1894 TTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGT 1953 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | ||||| |||||||| || | ||||||||| | ||||| || || | |||||| | Sbjct 1954 ACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCTATATAAGACC 2013 Query 48454 CACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | ||||| || || || || || |||||| ||||| || |||||| |||| Sbjct 2014 CCTGGGCTCTAATGCAATGTGTA--TGTAA-ACCTATGCCACCGGCAGATTTAGAAATTA 2070 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| | ||||| |||| ||||| |||||||| ||| ||||| || | Sbjct 2071 ATGCACATTGTTTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTCATAGCTATAA 2130 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | || || || | || || | || | | || | ||| || ||||| Sbjct 2131 GGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCAT 2190 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 2191 GTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCAC 2250 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||| || ||||| || || | ||| | ||| | |||||||||||| Sbjct 2251 CATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2296 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||| Sbjct 2584 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 2643 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 2644 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2693 >seq188143 Length=771 Score = 114 bits (126), Expect = 1e-20 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 || || ||||||| |||||| ||||| || ||||| || || || || || ||||| || Sbjct 169 ATCTCCGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTC 228 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | || || || | || | || ||||| || |||||||| || |||||| ||| Sbjct 229 ACTTGAACCTCTTGCGAGAAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCC 288 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC---ATCTGAGGTTAATGTATTC 19434 ||||| |||||||| |||||||| ||||||||||| || |||| ||||||| | | Sbjct 289 GCAAAGAATGCTAAGACATGTTTGATAAAATGTTTCTCGCAATCT---TTTAATGTCTCC 345 Query 19435 CAATC 19439 ||||| Sbjct 346 CAATC 350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 |||||||| ||||||||||| | |||||||| || || || |||||||| ||||| | | Sbjct 481 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTGTACATCTGC 540 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATC 19546 ||||| || ||||||| || || |||||||| |||| Sbjct 541 CATATGTCTGGATATTGAATTGGGAATATAACGAATC 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560307613693080