Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq15400 188 5e-43 seq91968 165 6e-36 seq72952 125 5e-24 seq6456 122 7e-23 >seq15400 Length=3181 Score = 188 bits (208), Expect = 5e-43 Identities = 359/524 (69%), Gaps = 6/524 (1%) Strand=Plus/Minus Query 27695 GGAACCGTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAG-ACAGTATCCGGC 27753 |||| || |||| ||| ||||| || || |||||||| ||| ||| | | | ||| Sbjct 1372 GGAAAAGTTGTGGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTG 1313 Query 27754 CAACAAACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGG 27813 | | | |||| ||||| ||||| || |||||||| || |||||| | ||||||||||| Sbjct 1312 GATCGTA-TACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGG 1254 Query 27814 CGGAGACGGTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAA 27871 ||| ||||| || || || ||| ||||| ||||| || | ||| | | || ||| Sbjct 1253 CGGTGACGGCATAAATGACAGCTTAAAAGAGATCG--AAGGCAGTTTCCAAGCACTGCAA 1196 Query 27872 AAGTCATGCTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTG 27931 ||| || ||| | ||||| | || || |||||| ||||| || | Sbjct 1195 CGGTCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTA 1136 Query 27932 CAAAAACCGCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAG 27991 |||||||| ||||| || | | ||||||||||| ||||| || ||||||||||| Sbjct 1135 CAAAAACCACAAAAAGGATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAA 1076 Query 27992 TTGATGGCCATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGG 28051 || ||| | | |||| | || || | | || || |||||||||||||||||| Sbjct 1075 TTAATGTCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGG 1016 Query 28052 ACTCTGAGCGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAG 28111 || || |||||| ||||| ||| | ||| | ||| | | ||||| || Sbjct 1015 ACGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG 956 Query 28112 TCTGTGCGCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAG 28171 || || || ||||| | ||| ||||| ||||| || || || ||| | || |||||| Sbjct 955 TCAGTAAAGGAGTTTCTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAG 896 Query 28172 TTTCCGGGTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGA 28215 ||||| ||||| || || || ||||| | |||||| ||| || Sbjct 895 TTTCCTGGTGGTAAAGGTGCTAACCCTGACCTCGGTAGCCCAGA 852 >seq91968 Length=4039 Score = 165 bits (182), Expect = 6e-36 Identities = 181/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 7840 TTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTA 7899 |||| |||||||| || || ||||||||||| || | || ||||| || ||||| Sbjct 636 TTCAGCGACTGGCCCCGCAGCATGAAGCAGAAACCCGAGGAACTCGCCGAGGCGGGATTC 577 Query 7900 TACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGAT 7959 | |||||| |||| || || | || ||||| |||||||||||||| || ||||| || Sbjct 576 TTCTACACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGAC 517 Query 7960 TGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATAT 8019 |||||| | |||| | ||||||||||| |||||||||||||| || |||||| || Sbjct 516 TGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGATGCGCCTAC 457 Query 8020 GTCAAACTAGTCAAAGGGGAG-GAATATGTTCAGAAGGTAATTACTGAAGCGTGCGCC 8076 || | || || |||||| | || ||||| |||||||| || || || ||||||||| Sbjct 456 GTTCAGCTGGT-AAAGGGCCGAGACTATGTGCAGAAGGTGATCACGGAGGCGTGCGCC 400 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 7585 CCCCAAACTATGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGC 7644 ||| || || | || | ||||| || ||||| |||| || | || || || || ||| Sbjct 951 CCCGAATCTCTCGCAAGGAACGGCTTCTATTACCTGGGCCGCGGTGATGAAGTACGCTGC 892 Query 7645 GCGTTTTGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCAT 7704 |||||||||||||| ||||| ||| ||||||| || |||||||| | |||||||| Sbjct 891 GCGTTTTGTAAAGTAGAAATTATGAAATGGGTCGCGGGCGACGATCCCGCCAAGGACCAC 832 Query 7705 CGGAAGTGGGCACCGCAGTGTCCGTTTCTGCG 7736 | |||||| || ||||| || || ||||| Sbjct 831 CAACGGTGGGCGCCCCAGTGCCCCTTCCTGCG 800 >seq72952 Length=1956 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| || || ||||| || | ||| |||||| ||||||||||| ||||| Sbjct 336 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 395 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| ||||||||| || || || || || |||||||| | |||| Sbjct 396 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGGGA 455 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| ||||| ||| ||| | | || ||||| | ||||| Sbjct 456 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCACT 515 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | || |||||||| |||||||| Sbjct 516 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || ||||| || || || ||||||||||| ||||||||||| ||| | ||| Sbjct 1485 AGACGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGA 1544 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||| || || ||||| ||||| | || | |||||| Sbjct 1545 CCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCT 1604 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||||||| | | || || || | ||||| || | ||| Sbjct 1605 TTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCTAGAGTA 1664 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||||| |||||||||||||| Sbjct 1665 ATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||| || || ||| ||||||||||||||||| |||||||| | ||| | Sbjct 1032 CGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGATAGGGTGCGACCA 1091 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| |||||||| ||||| || || || |||||||| | |||| ||| || ||| Sbjct 1092 TCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGAATGCCTTCTTTG 1151 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| || |||||| | | | || || || || || || | ||||| Sbjct 1152 TCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAAGTAATT 1211 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || | ||||| |||||||| ||||| Sbjct 1212 GTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||| || |||||||||||||| | | | ||| | || ||| Sbjct 582 ACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCC 641 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| ||||| || || |||||||| || | ||||| ||| ||||| || Sbjct 642 AATTGCTTACCAGCAAAAATGAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTATCCTGT 701 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || | || || |||| ||||| || ||| Sbjct 702 ATTTTAGCCTTCACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTT 761 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| || ||||| Sbjct 762 CCTGTTAATGTTTTCACAAATATTTGCAT 790 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || |||||||| || || ||||||||||| ||||||||||| | || Sbjct 1257 AGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATATTATAATCAGATAGTGTACGG 1316 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| || || || ||||| || || | |||||| || | ||||| || || Sbjct 1317 CCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATACCTTCT 1376 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | || || || | || ||||| | || Sbjct 1377 TTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCAGATGGTTCTACCTCTAGGGTG 1436 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||| || ||||| |||||||| Sbjct 1437 ATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1474 >seq6456 Length=2491 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| ||||| || || || | || || ||||||||||| |||||||| Sbjct 1213 CCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCAGAC 1272 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || ||||| || ||||| || ||||| | |||||| || | ||| Sbjct 1273 AGAGTGCGTCCATCTTCTAACTGTTTGCCGGCGAAAATCAGCCTCTGTTGGTCTGGAGGA 1332 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| ||| || ||| | | | || || || ||||| Sbjct 1333 ATGCCTTCCTTGTCCTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 1392 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||| |||||||||||||| ||||| Sbjct 1393 TCCAATGTGATAGTTTTGCCTGTCAGTGTTTTTACAAAAATTTGCAT 1439 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||||||||||| |||| | || || | |||||||||||||| Sbjct 793 TCTTTCTGAATATTGTAATCAGATAATGTTCGTCCATCTTCAAGTTGCTTACCGGCAAAA 852 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | |||||| || | ||||| ||| || ||||| ||| ||| || ||| Sbjct 853 ATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTAACATTT 912 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || |||| || || ||||| || |||| ||||| || Sbjct 913 TCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACG 972 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 973 AAAATTTGCAT 983 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||||||||| || | || || || |||||||| ||||| || Sbjct 1897 CCACCCCTAAGACGCAACACCAAGTGCAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1956 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | ||| || || ||||| || || | |||||| || | ||| Sbjct 1957 AGCGTACGACCATCTTCTAGCTGTTTCCCTGCAAAAATAAGCCTCTGTTGGTCGGGAGGA 2016 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| ||| || ||| | | | || || || ||||| Sbjct 2017 ATCCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 2076 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || |||| || ||||||||||| ||||| Sbjct 2077 TCTAATGTAATTGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 2123 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||||||||| |||||||| | || | || || | |||||| || ||||| Sbjct 2161 TCCTTCTGAATATTGTAGTCAGATAGTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAA 2220 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| || ||||| | ||||| |||||| || || ||| ||| || ||| Sbjct 2221 ATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTT 2280 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||| |||| || || || || || |||| || |||||| Sbjct 2281 TCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACA 2340 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 2341 AAAATTTGCAT 2351 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| || ||||||| || || || ||||||||||| || || Sbjct 1669 CCACCTCTCAGACGCAGAACTAAATGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGAC 1728 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| || |||| || ||||| | |||| Sbjct 1729 AGTGTACGTCCATCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 1788 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| || || ||| ||| || ||| | | | || || || ||||| Sbjct 1789 ATGCCCTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 1848 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || ||||||||||| ||||| Sbjct 1849 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 1895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379747463679081