Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq15400 244 9e-60 seq72952 127 2e-24 seq6456 109 5e-19 >seq15400 Length=3181 Score = 244 bits (270), Expect = 9e-60 Identities = 783/1197 (65%), Gaps = 29/1197 (2%) Strand=Plus/Plus Query 105818 TGTTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGC 105877 ||||||||||||| |||| ||| ||||| ||||| || |||||||||||||| | ||| | Sbjct 181 TGTTCATGGCATTCAGTAGATCACCGTTGTCGGCGTCGATTTCCCAAGCAAAGAGACCAC 240 Query 105878 CCAGTTTGTT-TCGATCGACATATTTAACCTTGCCCAAAACAGAATCGA-CGCTATCAAA 105935 | |||||||| | || ||||||||| |||| | | ||| || || | | | ||| | Sbjct 241 CTAGTTTGTTATTTCTC-ACATATTTACCCTTTTCAATAACTGA-TCTAGCATTGTCATA 298 Query 105936 CGAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCA-A 105994 | | | || || || || | |||||| ||||||||||| | Sbjct 299 GGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTA 358 Query 105995 ACG---TGTACACGTACGT-GTTCAGTTTTGTTTG-AATCTGTCGGTAATCTACGACGCC 106049 | | | ||| | | | | || ||| || | ||||| | ||| || || || || Sbjct 359 ATGAAATTCCCACTTGCCTTGAGCAATTTCATTCGCAATCTCCCTGTAGTCAACCACTCC 418 Query 106050 GTCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCA 106107 ||| | |||||| || |||| || || || || | | || | || ||||| | Sbjct 419 GTCTTGCCAAGTACCTTTGACA-GGTCCAGTAGC-GTTGCCTGTGAAGGGAATGTTGTCT 476 Query 106108 GTATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTG 106167 |||| ||||| ||||| || || || ||||||||||| |||| | || || Sbjct 477 TCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTAATACAATCTTC 536 Query 106168 TTGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCT 106227 || |||| || | ||| || ||| | || || | | | |||||| |||| Sbjct 537 TTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCC 596 Query 106228 TCGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTGTTCGACCAC 106287 | || |||||| |||||| || | | ||||||| || ||| || ||||| Sbjct 597 TTGGGATTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACCAG 656 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || ||||| || || |||||||| | |||||| | |||| ||| ||||| || | | Sbjct 657 GCTCCTTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCCG 716 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 |||| || || ||||| || | || | ||| ||||| || || ||||| Sbjct 717 TAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTCAACTCGTATTTC 776 Query 106408 TTGCCCGTTTGCAGTTCTAAT-TCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGAC 106466 ||||| | | || | || || || ||||| | || || |||| || || || Sbjct 777 TTGCCATTCTT-AGCTGAAAGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTAC 835 Query 106467 ATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGG 106526 ||| || | || ||| | || | ||| || || ||||| || || || Sbjct 836 ATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGTTAGCACCTTTACCACCAGG 892 Query 106527 AAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTAC 106586 ||| |||||||| ||||| || ||||| || |||||||| | | | ||| |||||||| Sbjct 893 AAACTCCCAATCGATATCTACACCATCGAAGAATTTCCATGTTAGGAGAAACTCCTTTAC 952 Query 106587 AGAATTTACAAACACGT-TTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATA 106645 || | ||||| ||| |||| || |||| | ||| |||| || || | | Sbjct 953 TGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAA 1011 Query 106646 GCGTCCAACCGCCTATAGACGGAAGCACTTTTAAAT----GCGGATTTGCCAATTTAGCC 106701 ||||||| || || || || ||||| | || || | |||| ||| ||||| Sbjct 1012 GCGTCCACCCACCAATCGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGT---TTTAGT- 1067 Query 106702 GCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGC 106761 | ||| || || |||||||| || ||||| ||||||||||| | |||| |||||||| Sbjct 1068 GACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGACAATCCTTTTTGT 1127 Query 106762 GGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTG 106821 || || |||| || ||||| |||||||| || || ||||| || || | || || | Sbjct 1128 GGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTA 1187 Query 106822 CATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCA 106881 || || ||||| | || ||||| || || ||||||| || ||||| || Sbjct 1188 CAGGACCGTTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTATGCCG 1247 Query 106882 TCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACT 106941 ||||||||||| ||||||||||| || || | ||||| | | ||| || | || | Sbjct 1248 TCACCGCCGCAAATGGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGGTATA 1307 Query 106942 TTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 ||| ||||| || || | ||| || |||||||| || || || ||| | ||| Sbjct 1308 CGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCGCCCACA 1364 >seq72952 Length=1956 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || |||||||| ||| |||||| || Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||||||||| | || ||||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || || |||||||||||| | ||| | | ||||| ||| Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||||||||||||||| ||| |||||||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTA 1490 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||||||||| || || ||||||||| ||| ||||| || Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| || || || || | ||| ||| ||| Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCAA 671 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || || ||||| || || |||||||||||| | ||| || | ||||| || Sbjct 670 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 611 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || || || ||| ||||| | | | |||||||| || Sbjct 610 ATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGGTAT 561 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| ||| | || Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| || | || ||||||| Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | ||||| || |||||||| |||||||||||| || | ||| | | || || | Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTT--CTGACTACA 1753 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| ||||||||||||||| |||| | ||| | | ||| |||| || || Sbjct 1752 ACATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGGTAT 1701 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| || ||||| || Sbjct 1475 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAACCATC 1416 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | ||| ||| ||| |||||||| || | ||| ||| || Sbjct 1415 TGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1356 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 28730 |||||| ||||| ||||| || |||||| |||||||| | | ||||| | |||||| Sbjct 1355 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTAT--CTGATTAT 1298 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || |||||||| ||||||||||| || | ||||| Sbjct 1297 AATATTCAAAAGGAATCTACTCTACATTTAGTATT 1263 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| ||| | || Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| |||||||| || | || ||||||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | || |||||||| || || |||||||||||| || | |||| | || || | Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTAT--CTGACTACA 1069 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | |||||||||||||| || || ||| ||||| | | || |||||||| || Sbjct 1068 ATATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGGTAT 1017 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| |||||| ||| Sbjct 562 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCCTCA 503 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| ||||||||||| | ||| ||||||| Sbjct 502 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 443 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || || || || |||| ||| | ||| | | || || || Sbjct 442 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 383 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || ||| ||||| |||||||| | || ||||||| || Sbjct 382 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGGTAT 333 >seq6456 Length=2491 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||||||| | || || ||||| || || ||| |||| |||| Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| ||||| || || | || ||| || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || || || |||||||| || |||||| ||| || | |||||||| Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAA 1261 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||| ||||||||| ||||| | || || Sbjct 1260 TATTCAAAAGGAATCTACTTTGCACTTAGTTTT 1228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| |||| |||| Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| || || ||||| || | || || ||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||| ||||| || |||||| | |||||| || || | || ||||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAAT 1488 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||||||||||||| ||||| | || || Sbjct 1487 ATACAAAAAGAATCTACTTTGCACTTAGTGTT 1456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || || ||||| || || ||| ||| |||| Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| |||||||| || | ||| ||| || Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 28730 |||||| | || ||||| || || ||| | |||||| | || | ||| | ||||| Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTAT--CTGATTAC 807 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| |||||||||||||| ||| | || | ||| | |||| || Sbjct 806 AATATTCAGAAAGAATCTACTCTCCACCTTGTTCTCAGACTGAGAGGTGG 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424075737960513