Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6456 156 6e-33 seq72952 136 6e-27 seq157178 95.1 2e-14 seq188143 86.0 9e-12 >seq6456 Length=2491 Score = 156 bits (172), Expect = 6e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| ||||||| |||||||| ||||| ||||| |||| ||| Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| || || ||||||||||| || ||||| || Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || ||||||| |||||||||||| || |||||| |||| ||||| ||||| || Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTACAA 805 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 ||| ||||| | || || || | || | ||| | ||||| ||||| Sbjct 804 TATTCAGAAAGAATCTACTCTCCACCTTGTTCTCAGACTGAGAGGTGGTGT 754 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| ||||||| ||||||||||| |||||||| |||| |||| Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || || |||||||||||||| ||||| || ||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || || || || |||||| | || | ||||| |||||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAAT 1488 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| ||||| | || | || |||||||| Sbjct 1487 ATACAAAAAGAATCTACTTTGCACTTAGTGTT 1456 Score = 136 bits (150), Expect = 6e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| ||||||| ||||| |||||||||||||| |||| ||| Sbjct 2124 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACAATTACATTAGAAGTGGAAGCTTC 2065 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| ||||| |||||||| || ||||| || || Sbjct 2064 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGGATTCCTCCCGACCA 2005 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || || ||||| |||||| | || | ||||||||||| Sbjct 2004 ACAGAGGCTTATTTTTGCAGGGAAACAGCTAGAAGATGGTCGTACGCTGTCAGATTATAA 1945 Query 156002 TAT 156004 ||| Sbjct 1944 TAT 1942 Score = 134 bits (148), Expect = 2e-26 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | |||||| |||| || |||||||| ||||| ||||| |||| ||| Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| || || || |||||||| |||||||| || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || |||||| ||||| || ||| | |||||| | ||| | || |||||||| Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAA 1261 Query 156002 TATATCCAAAG 156012 ||| || |||| Sbjct 1260 TAT-TCAAAAG 1251 Score = 132 bits (146), Expect = 7e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| ||||||| || ||||| ||| | ||||| |||| ||| Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || || ||||| || |||||||| ||||| || ||||| || Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 1777 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | |||| ||| || ||||||||||||||| | || | ||||| || || Sbjct 1776 GCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAA 1717 Query 156002 TAT 156004 ||| Sbjct 1716 TAT 1714 >seq72952 Length=1956 Score = 136 bits (150), Expect = 6e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| |||||||| |||| ||| Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| ||||||||||| |||||||| ||| Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| |||||||| | |||||| | || |||| || || ||| Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACAAT 1067 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 1066 ATTCAAAAAGAATCCACCCTTCA 1044 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| |||||||| |||| ||| Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| ||||||||||| |||||||| ||| Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || | || || || || Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAC 1751 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| | | |||||||| ||| Sbjct 1750 ATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGGT 1703 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | |||||||| || ||||| || ||||| | ||||| ||| ||| Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||||||||| ||||| |||||||| || ||||| ||| Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCAA 671 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| ||| |||||||| | |||||| | ||||| || ||||| ||| Sbjct 670 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 611 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 610 ATCCAGAAAGAGTCCACCCTTCACTTGGT 582 Score = 118 bits (130), Expect = 2e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||| | || ||||| || || || |||| || || ||| Sbjct 1018 ATGCAAATATTTGTCAAGACACTTACAGGAAAGACCATAACTCTAGAGGTGGAGCCATCT 959 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||| || ||||||||||| || || |||||||| ||| Sbjct 958 GACACCATTGAAAACGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCAA 899 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||| |||||||| |||||| |||||||||| || || | Sbjct 898 CAACGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGAACTTTATCGGACTACA-- 841 Query 156003 ATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | || |||||| Sbjct 840 ACATCCAAAAGGAGTCTACCCTTCAT 815 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | || |||||||| || || |||| || ||| || Sbjct 1475 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAACCATC 1416 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||||||||| || || ||||| |||||||| || || ||||| || Sbjct 1415 TGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1356 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | |||| ||| || || || || |||||| | | || |||| |||||||| Sbjct 1355 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1296 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| || | || || |||||||| || Sbjct 1295 TAT-TCAAAAGGAATCTACTCTACATTTAGTATT 1263 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || || |||||||| ||||||||||| ||| || Sbjct 562 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCCTCA 503 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || || ||||| ||||| || || || ||||| ||| Sbjct 502 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 443 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || ||||||||||| || ||| | ||| | || || || ||| Sbjct 442 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 383 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | || || || ||| | ||||||| ||| Sbjct 382 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGGT 335 >seq157178 Length=885 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 17864 TTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 |||| ||||||||| ||||| ||||| ||||| ||||| || ||||||||||| || | | Sbjct 502 TTTTGGTATTCTCCAACTTTCTTCTCAAAGAAGTTTGTTTTGCCTTCCAATGAGATGAGA 561 Query 17924 TTCATAAAATCAAATGGATT 17943 ||||||||||| |||||||| Sbjct 562 TTCATAAAATCGAATGGATT 581 >seq188143 Length=771 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 || || ||||| | |||||||||| || ||||||| ||| || | || || || | Sbjct 169 ATCTCCGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTC 228 Query 18515 TATTGAATCTC--GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 ||||| ||| || | ||| || | ||||| ||||||||||| ||||| |||| || Sbjct 229 ACTTGAACCTCTTGCGAGAAACGCT--CCACCAAGTTCTCATTAACAATACCATCAGAAG 286 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTC 18612 || || ||||| || |||| ||| || |||||||| || Sbjct 287 CCGCAAAGAATGCTAAGACATGTTTGATAAAATGTTTCTC 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729526835105200