Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq42954 147 6e-30 seq11492 113 1e-19 seq93386 91.5 4e-13 >seq42954 Length=2876 Score = 147 bits (162), Expect = 6e-30 Identities = 625/973 (64%), Gaps = 32/973 (3%) Strand=Plus/Plus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 |||||| || || | ||||||||| ||||||||||| || || ||||| ||| | Sbjct 1256 AAATGTATCTGCCATACCCTGAACACCAATACCGACAGGACGGTGCCTCATATTTGAAGT 1315 Query 155459 GCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517 ||| |||| | || ||||| || |||||||| | || |||||||| | || Sbjct 1316 TTTTG-CTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTCTGAGTCA 1374 Query 155518 ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577 | ||| || | ||| |||||| | | | |||| |||| ||| ||||||| Sbjct 1375 CAATCTTAGTGATTTCTTTTAATTTTTTAAAATTAAATCGATTATTTTCA---ACAAACA 1431 Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTA 155637 | ||| | || || || || || || || || || | || |||||| | Sbjct 1432 TGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCA 1491 Query 155638 CAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTAC 155697 ||| |||| ||| || || || || || ||||| | ||| || || ||| || | Sbjct 1492 CAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCC 1551 Query 155698 TGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAA 155757 |||| ||||||||||| || | || ||||| || || ||||||| || || || | || Sbjct 1552 TGTTGCAAGCATCCTTATACAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAA 1611 Query 155758 T---CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC----TTCCGAC 155810 | ||| ||| | || | || | | || ||| ||| || ||| Sbjct 1612 TTGACTT---CCATAACTCTTGAGCTCTGA----CTCGTTTTATAAACCGTTTTTCTTCT 1664 Query 155811 TCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 |||||||| |||||| || |||| | ||||| |||||||| ||| || ||||| | Sbjct 1665 TCATATTTGGCATATAGTGC-TTCGA-ATTCCTCTCCGTAACAGTCAGCGAGGCCAGGAC 1722 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATAC 155926 | | || || || | || |||| || || || || || || |||||| | Sbjct 1723 AATCATGAGGACACATGAGACTCCAATCTTCAT--CCTTTTCTACCCTTTTCATAAACAG 1780 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGAT 155985 ||| ||| | |||||| || || || || || | || || | || ||| | Sbjct 1781 ATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG-T 1839 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || |||||||| || || || | ||| ||||| | || || |||| Sbjct 1840 TCTTTTTTAAATCTAAGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAA 1899 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | ||| | ||| ||||| ||||||||||| | ||||| || ||| | || | Sbjct 1900 ATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTC 1959 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 | ||| || | | |||||| ||| ||||| || || |||| || || | Sbjct 1960 TCAACATTGGCACTAGACCATTTGAAACCCCATTAGTGCCAGCTATATAAGACCCCTGGG 2019 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 | || ||| |||||| || || ||||| | ||||||||||| || |||| Sbjct 2020 CTCTAATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATT 2079 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 |||| ||||| |||||||||||||||| ||| |||| ||| | || || |||| | Sbjct 2080 GTTTTAAAGTATCGAAAATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAGG 2139 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | || || || ||||| |||| ||| |||||||| ||||||| |||||| Sbjct 2140 AGGAAAGCTGTGGCCGCGGTGTAGCAGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAAT 2199 Query 156343 ACTTATTAGACAT 156355 | || | ||||| Sbjct 2200 ATTTCTCTGACAT 2212 >seq11492 Length=3974 Score = 113 bits (124), Expect = 1e-19 Identities = 190/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| |||| |||||||||||| ||||||||| || |||||||| || ||| Sbjct 2151 TCCATAGCCTTTATTAGACGACGCTGAATGTAACCAGTTTCAGCAGTTTTTACCGCAGTA 2092 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| ||||| || ||||| | | ||| ||| | || Sbjct 2091 TCAATGAGACCTTCACGACCTCCCATGGCGTGGAAATAAAACTCAGAAGGTGTCAAGCCA 2032 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || |||||||| | | || || || |||| || ||| | Sbjct 2031 GCAAGGTATGAATTTTCGACGAAACCTCTAGATTCTGGACCGTAATCATC---TTTGATG 1975 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || || || | | ||| | || ||||||||||| ||||||||||| Sbjct 1974 AAATGTGGCAATGTTCTTTTACGAAAACCGAAAGGAATACGCTTTCCTTCAACGTTCTGT 1915 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | ||| || || || Sbjct 1914 TGACCTACACAAGCAATAACCTGTGAGATGTT 1883 >seq93386 Length=4403 Score = 91.5 bits (100), Expect = 4e-13 Identities = 383/594 (64%), Gaps = 17/594 (3%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| |||||| || || | | ||| | ||| || | ||| | || Sbjct 3741 GCTATCAGACCACAGAAATTACAAACGTGAATACGGTACGGATCTGAAACTTCAAAGAGA 3682 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | | ||| | | |||||||| | || ||||||||| |||||||| || Sbjct 3681 CGTTCTCTCAAGAACTGTGCGGCACCGTGGGCGATTTGACAATCACGTTCCATTTCCCCA 3622 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG-AGTGAGATTA--ACC 251580 ||||| | ||| || || ||||| | ||||| ||| || || | | ||| ||| Sbjct 3621 AAACGCAAACCTCCGTCACGAGCACGCCCCTCCATAGGTTGTCGTACCAAAATTTGTACC 3562 Query 251581 ATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || | | | || || |||| |||||||||||| ||||||||||| Sbjct 3561 ---GGTCCTCTTGCTCTCGAGTGAATTTTGTCATCTACCATATGCTTAAGACGCTGGTAA 3505 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATA 251700 ||| |||||| | ||| | || | || | |||||| || ||||||||||| Sbjct 3504 TATGTGGGACCTAAGAATACTTGCGCATTAATCTTTCGTCCAGTATGACCGTTATACATA 3445 Query 251701 ACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATC 251760 |||||||| || | | |||||| | ||||| || | ||| | | Sbjct 3444 ACTTCGTTACCCCGAAGGTGATAACCGTACTCTTGTAGTAAAGATGAAATTTTCTGCACG 3385 Query 251761 TTGAAT---TTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCA--ACACTT 251815 || | | | | |||| ||||| || || || | | ||| | | |||| | Sbjct 3384 TTAACTGCATCGTTAAA--TGGTGTCGCGTCACCAATTTCTCCCTTGTTTGATGACACCT 3327 Query 251816 TGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGAT 251875 | ||| | ||| ||| || | || ||||||||| || ||||||||||||| Sbjct 3326 TTCCTTGTATACACTCAATCAAATGACCAATTGTCATACGAGAAGGGATAGCATGGGGAT 3267 Query 251876 TGATGATGATGTCGGGTTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATA 251934 | || ||||| || || | | || || ||| || || |||||||| | || || ||| Sbjct 3266 TAATAATGATATCTGGCGTTAAGCCCTC-GCATGTAAACGGCATATCTTCTTG-TCGATA 3209 Query 251935 ATGT-TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || ||||| ||||| ||||| |||||||||||| |||||||| ||||| Sbjct 3208 CTGGATTCCACATGTTCCTTTTTGACCGTGACGAGAAGCAAACTTATCCCCAAT 3155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466983494662939