Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq91968 255 5e-63 seq15400 194 1e-44 seq6456 118 8e-22 >seq91968 Length=4039 Score = 255 bits (282), Expect = 5e-63 Identities = 371/519 (71%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 ||||| |||| ||| |||||||||| || ||||| |||||||||||||| ||||| || Sbjct 933 AACGGCTTCTATTACCTGGGCCGCGGTGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 874 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || || |||||||||| ||| Sbjct 873 ATTATGAAATGGGTCGCGGGCGACGATCCCGCCAAGGACCACCAACGGTGGGCGCCCCAG 814 Query 103688 TGTCCGTTCCTGaaaa---aaaCGGCTGCTGG--------CGCGCT-GCCCG---CCGGC 103732 || || |||||| | ||| | | || ||||| ||||| ||| Sbjct 813 TGCCCCTTCCTGCGGCGGCAGGCGGATTCCGGGAACGTGCCGCGCGAGCCCGTGCCCGCA 754 Query 103733 CTTGCGATGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGC 103792 | ||| | ||| || || || ||||| ||| |||||| |||| | | |||| || Sbjct 753 CCCGCGCCCGTCGGCCATGATGAATGCGGGGTGCGCGCGC--CCGTTCCCG--CGCCCGC 698 Query 103793 GTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAAC 103851 | | ||||||||| ||||| |||| | || | ||||||| |||| | | ||| | Sbjct 697 GCCCCGCATGCCCGACCCCGTGCACGCGCGCTACGCCTCCAAGGCGGCTCGCATACGCAG 638 Query 103852 TTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATT 103911 || | || |||||||| || |||| |||||||| ||| | | ||||| || ||||| Sbjct 637 CTTCAGCGACTGGCCCCGCAGCATGAAGCAGAAACCCGAGGAACTCGCCGAGGCGGGATT 578 Query 103912 CTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGA 103971 || |||||||||||| ||||||| || || ||||||||||| ||||| || || ||||| Sbjct 577 CTTCTACACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGGCTCAAGGA 518 Query 103972 TTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATA 104031 |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| || Sbjct 517 CTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGATGCGCCTA 458 Query 104032 CGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 ||| | || || ||||||| || ||||| || ||||| Sbjct 457 CGTTCAGCTGGTAAAGGGCCGAGACTATGTGCAGAAGGT 419 >seq15400 Length=3181 Score = 194 bits (214), Expect = 1e-44 Identities = 644/989 (65%), Gaps = 27/989 (3%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || ||||||||||| || ||| | || || || || || | || | Sbjct 1357 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 1298 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || || || | ||| || | || || || || || ||||||||||| ||||| | || Sbjct 1297 CCTAATCTTACTCATTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAAT 1238 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | | ||| || |||||||| | || |||||||| || || | |||||| Sbjct 1237 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCCGT 1178 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 1177 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 1118 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 ||||| | |||||||||||||||||||| ||||| || || ||||| | || | Sbjct 1117 TTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 1058 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC---G 29429 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 1057 GCCCGCCCTGAATTGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTGCCGATCCTTTC 998 Query 29430 TTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTT 29489 |||| ||| | || | | | | | || |||||| | || || | || ||| Sbjct 997 TTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTTT 941 Query 29490 CTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAA 29549 || | ||||| || || || || || || || || ||||||||||| ||||| ||| Sbjct 940 CTCCTAACATGGAAATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAAA 881 Query 29550 GGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACT 29608 || || ||||| ||| || || | | || || | || ||| | ||| | Sbjct 880 GGTGCTAACCCTGAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGAT 825 Query 29609 AAAGGAATTGCGCGCAATGATGGACGAG-TTACAATTGCAAACGGGCAAAACGTACGAGT 29667 || ||||| || | ||| | || ||| || || | | | ||||| | ||||||| Sbjct 824 GAAAGAATTACGTGAGATGCTCGATGAGCTTTCAGCT-AAGAATGGCAAGAAATACGAGT 766 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 |||| || || || || ||| || || || || ||| | |||| | || | Sbjct 765 TGACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAGGCTC 706 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||| | | | ||| | || ||| | ||||| || || || ||||| || |||||||| Sbjct 705 AAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAAGGAGCCTGGTCAAA-- 648 Query 29788 CCGAT----TTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTG 29843 ||| |||| | | ||||| | | |||||||| ||||| || || ||| Sbjct 647 -TGATACTCTTGGAC-ATCAAACACCATTGTACGCGCCTGCATGGAATCCCAAGGAAACT 590 Query 29844 TACAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATT 29903 |||| | ||| || || || | | | ||||| ||| | || || ||| Sbjct 589 TACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTAAGAAGATT 530 Query 29904 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGAC 29963 | | || || |||||||| || || |||||||| ||||| || | || ||| ||| Sbjct 529 GTATTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACGAAGAC 473 Query 29964 AACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTT 30020 ||| | || || |||| ||| |||| || || | || |||||| ||||||| || Sbjct 472 AACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTG 413 Query 30021 GTCGACTATCGCCAAATTGAAAACGAAAT 30049 || ||||| | | |||| || ||||| Sbjct 412 GTTGACTACAGGGAGATTGCGAATGAAAT 384 >seq6456 Length=2491 Score = 118 bits (130), Expect = 8e-22 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||| | || ||||| || ||||| | ||| ||| || Sbjct 1212 AATGCAAATTTTTGTGAAAACACTTACCGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 1153 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||| ||| ||||| ||||| | ||| || || Sbjct 1152 TGATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGGATTCCCCCAGACCA 1093 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||||| ||||||| ||| || ||||| || || |||||| ||| || | |||| Sbjct 1092 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGC----ACACTGTCAGACT 1037 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| ||||||||||| ||||| |||||| |||| | ||| || |||| |||| Sbjct 1036 ACAATATTCAAAAGGAATCTACCTTGCACTTGGTACTAAGACTGAGAGGTGGAA 983 Score = 105 bits (116), Expect = 5e-18 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | || |||||||| ||||| | ||| ||| ||| Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||||| |||||||||||| | || || || Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || || ||||||| ||| || ||||| || || |||||| ||| || | ||||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGC----ACACTGTCAGACTA 1492 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || ||||| |||||| | |||||| Sbjct 1491 TAATATACAAAAAGAATCTACTTTGCACTTAGTGTTG 1455 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || ||||| || || || | ||| ||| ||| Sbjct 2352 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 2293 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| |||||||| ||| | ||| ||||| Sbjct 2292 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 2233 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||||| ||| || || ||||| || || | ||| | | |||||||| Sbjct 2232 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTATCTGACTACAA 2173 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| ||||| |||||| |||| Sbjct 2172 TATTCAGAAGGAATCTACTTTGCACCTGGT 2143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || ||||| || || || | ||| ||| ||| Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| |||||||| ||| | ||| ||||| Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 1777 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| |||||||||| ||| || || ||||| || || | ||| || | |||||||| Sbjct 1776 GCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAA 1717 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||| ||||| || || Sbjct 1716 TATTCAGAAGGAATCTACCTTACA 1693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || |||||||| ||||| | ||| ||| ||| Sbjct 2124 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACAATTACATTAGAAGTGGAAGCTTC 2065 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| || |||||||| | || || || Sbjct 2064 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGGATTCCTCCCGACCA 2005 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || |||||||| || || | || || | || || || Sbjct 2004 ACAGAGGCTTATTTTTGCAGGGAAACAGCTAGAAGATGGTCGTACGCTGTCAGATTATAA 1945 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| ||||| || || |||||| |||||||| Sbjct 1944 TATTCAGAAGGAATCAACTTTGCACTTGGTGTTG 1911 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/218 (69%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||| | ||||||||||| || || | ||| ||| ||| Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| || || |||||| | || || || Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||||| || |||| || || |||||| | || |||||| || || | || | Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGC----ACTCTGTCTGATT 1265 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 | || ||||||||||| ||||| |||||| | || ||| Sbjct 1264 ATAATATTCAAAAGGAATCTACTTTGCACTTAGTTTTG 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397630617509083