Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq42954 194 4e-44 seq11492 116 9e-21 >seq42954 Length=2876 Score = 194 bits (214), Expect = 4e-44 Identities = 431/641 (67%), Gaps = 7/641 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| ||| ||| || || || ||| |||||||||||||| ||| || | ||| Sbjct 2140 TCCTGCTTCCTTATAGCTATGAAAGACGATAGTATTGAAGGTATTTTCGATACTTTAAAA 2081 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 || ||| | ||||||||| | || || || ||| | || ||| ||| | Sbjct 2080 CAATGTGCATTAATTTCTAAATCTGCCGGTGGCATAGGTTTACATACACATTGCATTAGA 2021 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | | || | |||| || | || || | ||||| ||| || || |||||||| Sbjct 2020 GCCCAGGGGTCTTATATAGCTGGCACTAATGGGGTTTCAAATGGTCTAGTGCCAATGTTG 1961 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCA 110756 ||||| | |||| | ||||| | |||||| |||||||||| || | | | || || Sbjct 1960 AGAGTGTACAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCGGTGCA 1901 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || | || ||||||||| | || |||||||| |||||||| || ||| Sbjct 1900 TTTGCAATTTACTTAGAGCCTTGGCATGCGGACATATTTGAGTTCTTAGAT-TTAAAAAA 1842 Query 110817 AATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 | || ||| |||||| ||||| | || | |||||||| | ||||| |||| Sbjct 1841 GAACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGA 1782 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | || |||||| | || || | ||| ||| ||| |||||||||||| || Sbjct 1781 TCTGTTTATGAAAAGGGTAGAAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTG 1722 Query 110936 TCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 |||||| || |||| ||| || ||| | || || |||| || || | ||||||||| Sbjct 1721 TCCTGGCCTCGCTGACTGT-TACGGAGAGGAATTCGAAGCACTATATGCCAAATATGAAG 1663 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 ||||| |||| |||| | | ||||||||| | ||| ||| | ||| Sbjct 1662 AAGAAAAACGGTTTATAAAACGAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAG 1603 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 | ||||| || ||||| || || ||||| |||||||| ||| | || | || || Sbjct 1602 CTCAAGTGGAGACTGGTACACCATATATGTTGTATAAGGATGCTTGCAACAGGAAGAGTA 1543 Query 111115 ATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 1542 ATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 1502 >seq11492 Length=3974 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || ||||| |||| | || ||| | || ||| | |||| |||||| | Sbjct 890 CATTTGAGAGATGATGATCTGGTTATTTTTAATCGACAGCCAACTTTGCACAAAATGAGT 949 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||||||||||| | | | |||||||| | ||| | ||| Sbjct 950 ATGATGGGTCACAGGGTCAAAGTATTGCCATGGTCCACATTTCGTATGAATTTGAGTTGC 1009 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | |||| |||||||| ||||||||||| || ||||||||| | |||||||||||||| Sbjct 1010 ACTTCGCCATATAATGCTGATTTTGATGGCGACGAAATGAATTTACATGTACCTCAATC 1068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| ||| Sbjct 575 AAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTTTCTGCC 634 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCC 305100 |||| ||||||||| |||||| || || ||| || || || || ||||||| || Sbjct 635 AGAACTGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCC 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182914777520467