Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15400 167 2e-36 seq6456 109 5e-19 seq72952 105 6e-18 seq91968 95.1 1e-14 >seq15400 Length=3181 Score = 167 bits (184), Expect = 2e-36 Identities = 371/546 (68%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842 ||||| || || | ||| || ||||||| || ||| |||| | || |||||||| || Sbjct 1402 GAAAAAAATAAACCATTCAAGCAAACATCTGGA-AAAGTTGTGGGCGCCTACTTCGTAGA 1344 Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902 ||||| || |||| || | || |||| || | || || ||| | | || Sbjct 1343 ATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 1284 Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962 ||||| || | || | || || |||||||| || |||||||| ||| || |||| Sbjct 1283 TTTGCTCTATGGCTTTATTCCCATTTGCGGCGGTGACGGCATAAATGACAG-CTTAAAAG 1225 Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021 || || || ||||| | || ||||| || || || ||| || || || || || | Sbjct 1224 AGATCGAAGGCAGTTTCCAAGCACTGCAACGGTCCTGTAGCGGCCGTGAGGACTTCAAAG 1165 Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081 | | || ||||| || ||||| || | || ||||| || ||||| | || | |||| Sbjct 1164 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGGA 1105 Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141 ||||||| ||||||||||||||||| ||||||||| || ||| ||| || | | Sbjct 1104 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 1045 Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCAT 25200 ||||| | || | ||||| || || ||||| |||| | ||||| ||||| | | Sbjct 1044 TGAAGATTCTTCCCTCGATTGGTGGGTGGACGCTTG-CCGATCCTTTCTTCTTTTTAGTT 986 Query 25201 GACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAA 25259 ||| | | | | ||| || | | || || |||| |||||| | || ||||| Sbjct 985 GACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTAAAGGAGTTTCTCCTAACATGGAA 927 Query 25260 GTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCA 25319 || ||||| || || || || || ||||||||||| || || ||||| || || ||| | Sbjct 926 ATTCTTCGATGGTGTAGATATCGATTGGGAGTTTCCTGGTGGTAAAGGTGCTAACCCTGA 867 Query 25320 CGTCGG 25325 | |||| Sbjct 866 CCTCGG 861 >seq6456 Length=2491 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||| ||||||| | | || || || ||||| |||||||| || ||||| | Sbjct 1681 CGCAGAACTAAATGTAAGGTAGATTCCTTCTGAATATTGTAGTCTGACAGTGTACGTCCA 1740 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || || | | | || || | || |||||||| || ||||| |||||| Sbjct 1741 TCTTCGAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTA 1800 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | ||| | ||||| | | |||||||| | || | Sbjct 1801 TCCTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAGTGTGATA 1860 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| || |||| ||||| ||||| Sbjct 1861 GTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 1895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 || ||||| ||||| ||||| || | | ||| | || |||||| || || ||||||| Sbjct 790 GATTCTTTCTGAATATTGTAATCAGATAATGTT-CGTCCATCTTCAAGTTGCTTACCGGC 848 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | | || | | |||||| ||||| || ||||||||||| || ||||||| || | Sbjct 849 AAAAATCAACCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTAAC 908 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | ||| | ||||| | | || ||||| | || | ||||| |||||||| ||||| Sbjct 909 ATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTT 968 Query 132109 TATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 969 CACGAAAATTTGCAT 983 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || || || | | || |||||||| || || ||||| || || || | Sbjct 1453 CGCAACACTAAGTGCAAAGTAGATTCTTTTTGTATATTATAGTCTGACAGTGTGCGTCCA 1512 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | | || || | ||||| || ||||| |||||||||||| Sbjct 1513 TCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGAGGAATGCCTTCTTTA 1572 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| || | | ||| | || || | | |||||||| | || | Sbjct 1573 TCCTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAAGTAATA 1632 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| ||||| | ||||| ||||| Sbjct 1633 GTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 1667 >seq72952 Length=1956 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| |||| |||| || | | | || ||||||||||| |||||||| | ||| Sbjct 1026 CGCAAACGCAGTACCAGGTGAAGGGTGGATTCTTTTTGAATATTGTAGTCAGATAGGGTG 1085 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || ||||| | | |||| ||||| |||||||||||||| |||||| Sbjct 1086 CGACCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCTGGAGGAATGCCT 1145 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| || | | ||| | || || | | || ||||| | Sbjct 1146 TCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCTACTTCTAAA 1205 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| || ||||| | ||||| ||||| Sbjct 1206 GTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1246 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | || ||||||||||||||||| || | || || | Sbjct 1488 CGTAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGACCA 1547 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || ||||| | | |||| |||||||| ||||| || || ||||| ||||| Sbjct 1548 TCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTG 1607 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | |||||| | || |||||||| | || | Sbjct 1608 TCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCTAGAGTAATG 1667 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||||||||||| Sbjct 1668 GTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | |||||||| ||||| |||||||| | ||||| | Sbjct 348 CGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCA 407 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||| | | |||||||| ||||||||||| || || || ||||| Sbjct 408 TCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCTTTG 467 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | ||| || | || |||||||| | || | Sbjct 468 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCCACTTCTAATGTGATA 527 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || |||| || |||||||| Sbjct 528 GTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 562 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| | || ||| |||||| ||||| || |||| | Sbjct 825 GACTCCTTTTGGATGTTGTAGTCCGATAAAGTTCGCCCATCTTCCAGCTGCTTGCCGGCA 884 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| |||||||||||||| || || |||||||| ||| || || | Sbjct 885 AAGATGAGACGTTGTTGATCTGGAGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACG 944 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | |||||||| || | || | || || || || || || || Sbjct 945 TTTTCAATGGTGTCAGATGGCTCCACCTCTAGAGTTATGGTCTTTCCTGTAAGTGTCTTG 1004 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 1005 ACAAATATTTGCAT 1018 >seq91968 Length=4039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 115649 CGGCTTCTATTACACGGGCGTCGGTGACGAAGTGCGTTGCGCTTTCTGCAAAGTGGAGAT 115708 ||||||||||||| |||| |||||| ||||| || ||||| || || ||||| || || Sbjct 931 CGGCTTCTATTACCTGGGCCGCGGTGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAAT 872 Query 115709 TATGAGATGGCAGCCCGGAGACGATCCATTGACGGACCACAAACGATGGGCGCCTCAGTG 115768 ||||| |||| | || |||||||| | ||||||| |||| |||||||| ||||| Sbjct 871 TATGAAATGGGTCGCGGGCGACGATCCCGCCAAGGACCACCAACGGTGGGCGCCCCAGTG 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475083976858920