Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq55597 136 4e-27 seq228749 91.5 2e-13 >seq55597 Length=1711 Score = 136 bits (150), Expect = 4e-27 Identities = 216/307 (70%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | |||||||||||| || || ||| Sbjct 1471 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACCACAAAGTCCTCGGGCGCGTCCTGC 1412 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| || || || ||||||| ||||||||||||||| Sbjct 1411 TGCAGCATGAGCCACATGGCCTCCACATAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 1352 Query 159064 TCCATGTTCCCGAGCTCGA----TGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA 159118 || | || |||||||||| ||| | || | | || || | || Sbjct 1351 TCGAGATTGCCGAGCTCGAGGTGCGACAAAAGGCCGAGGTGT--ATCTTGGCGACGCCCC 1294 Query 159119 GCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAA 159178 ||||||||||||||||||| || | | ||||| ||| ||| || || ||||||| Sbjct 1293 GCGTGATCTTGCGCGTCACGAAGTTCTCGCCGCGGCGTGGGCTCTCGTGATTGAACAGAA 1234 Query 159179 TGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAA 159238 ||| | || ||||||| | || | ||||||||| || ||||||||| || Sbjct 1233 GCCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTTCACCACTATCCAGTAGCCGT 1174 Query 159239 AGAGCTT 159245 | ||||| Sbjct 1173 ACAGCTT 1167 Score = 134 bits (148), Expect = 2e-26 Identities = 201/283 (71%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | ||| || || ||||| |||| Sbjct 1471 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACCACAAAGTCCTCGGGCGCGTCCTGC 1412 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | || ||||| ||||| ||||||||||||||| Sbjct 1411 TGCAGCATGAGCCACATGGCCTCCACATAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 1352 Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668 || || || |||||||||| || ||||| ||| || || | ||| Sbjct 1351 TCGAGATTGCCGAGCTCGAGGTGCGACAAAAGGCCGAGGTGT--ATCTTGGCGACGCCCC 1294 Query 124669 GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725 | || |||||||||||||| || |||| ||||| || |||||| ||||||| Sbjct 1293 GCGTGATCTTGCGCGTCACGAAGTTCTCG---CCGCGGCGTGGGCTCTCGTGATTGAACA 1237 Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 ||| || | ||||| ||||| ||||||| |||||||||||| Sbjct 1236 GAAGCCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTT 1194 >seq228749 Length=622 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | ||| |||||||| ||||| || | || || ||||| || || Sbjct 302 GTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCCCCGGACAGGCGGGTACCAAACTGA 361 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| || ||||| ||||| | |||||| | ||||| | |||||||||| || || Sbjct 362 CCACGGGGTTCCAACAGGTTAATGTTGTTTGACCCCACGTAATTTTGAGCCAGATTCACT 421 Query 117425 ATCGT 117429 || || Sbjct 422 ATTGT 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545462535250600