Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20xanthocles_20[genbank_20GCA_5F900068825.1_202017-04-27] 256,347 sequences; 198,611,823 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq72952 187 3e-42 seq6456 178 1e-39 seq57945 118 1e-21 seq228749 86.0 7e-12 >seq72952 Length=1956 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || || || || ||||| || || Sbjct 1475 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCCTAGAGGTAGAACCATC 1416 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| ||||||| || || || ||||| || || ||||| |||||||| Sbjct 1415 TGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1356 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||||||||| || ||||| || |||| ||||| ||| | || ||||| Sbjct 1355 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1296 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||||| ||||| ||| |||| ||||||||||| ||||| Sbjct 1295 TATTCAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCGTGGTGG 1248 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||| || | Sbjct 1018 ATGCAAATATTTGTCAAGACACTTACAGGAAAGACCATAACTCTAGAGGTGGAGCCATCT 959 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||| ||||| || || ||||| ||||||||||| || Sbjct 958 GACACCATTGAAAACGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCTCCAGATCAA 899 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || ||||| || || |||| || || || | ||||| || Sbjct 898 CAACGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGAACTTTATCGGACTACAAC 839 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||||| || | ||||| || ||||| Sbjct 838 ATCCAAAAGGAGTCTACCCTTCATCTTGTACTACGTCTGCGAGGTGG 792 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || |||||| | || || || | | Sbjct 1246 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1187 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | |||||||||||||| ||||| || || ||||||||||| || Sbjct 1186 GACACAATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 1127 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||||||| | || |||| ||| |||||| | ||||| ||| Sbjct 1126 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTATCTGACTACAAT 1067 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||| ||||| || || ||||| | || || || Sbjct 1066 ATTCAAAAAGAATCCACCCTTCACCTGGTACTGCGTTTGCGAGGAGG 1020 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || ||||| |||||||| || || || | | Sbjct 1702 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTAGAAGTGGAACCCTCT 1643 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| || ||||| ||||| || || || || ||| Sbjct 1642 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1583 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||||||| | || |||| ||| || || | || || || Sbjct 1582 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTCTTTCTGATTACAAC 1523 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| |||||||| | || || |||||||| |||||| Sbjct 1522 ATTCAAAAAGAATCTACTCTTCACTTGGTATTACGTCTTCGTGGTGGA 1475 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || ||||| ||||| || || || || || | Sbjct 790 ATGCAAATATTTGTGAAAACATTAACAGGAAAGACCATTACCCTGGAAGTAGAACCATCT 731 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||||||||| ||||| ||||| || ||||| |||||||| Sbjct 730 GACACAATCGAGAATGTGAAGGCTAAAATACAGGATAAGGAAGGCATTCCCCCAGACCAA 671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||||||||||||| | || |||| ||| || | | || || ||| Sbjct 670 CAGCGTCTCATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 611 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| ||||| | || | ||||| || || || Sbjct 610 ATCCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 564 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || |||||| | || || || | | Sbjct 1930 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACTTTAGAAGTAGAAGCCTCT 1871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||||||||| || ||||| || || ||||||||||| || Sbjct 1870 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1811 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || || |||||| | || |||| |||||| || | ||||| || Sbjct 1810 CAACGTCTTATTTTCGCGGGCAAGCAATTGGAAGATGGTCGTACACTTTCTGACTACAAC 1751 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| ||| | ||| |||| | ||| | | ||||| Sbjct 1750 ATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTTTAAGAGGTGG 1704 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || ||||| || | || || || | Sbjct 562 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCCTCA 503 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || || ||||| ||||| ||||| ||||| || Sbjct 502 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 443 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||||||||| ||||||||||| || ||||||| |||||| || | ||||| ||| Sbjct 442 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 383 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || || || |||||| | || | || || ||||| Sbjct 382 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCT 345 >seq6456 Length=2491 Score = 178 bits (196), Expect = 1e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || |||||||||||||||||||||||||| |||||| | Sbjct 1212 AATGCAAATTTTTGTGAAAACACTTACCGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 1153 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || || |||||||| || ||||| || ||||| |||||||| Sbjct 1152 TGATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGGATTCCCCCAGACCA 1093 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || |||||||| || || ||||| || |||| || || || ||||||| || Sbjct 1092 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 1033 Query 27585 TGTCCAAAAGGAATCCAC 27602 | | ||||||||||| || Sbjct 1032 TATTCAAAAGGAATCTAC 1015 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||||||||| || || || || || | Sbjct 1896 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 1837 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 1836 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 1777 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||||||||| ||||| ||||| |||| ||||| || ||||||| || Sbjct 1776 GCAAAGACTTATTTTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGTCAGACTACAA 1717 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || |||||||| || | ||| |||| ||||||| | ||||| Sbjct 1716 TATTCAGAAGGAATCTACCTTACATTTAGTTCTGCGTCTGAGAGGTGG 1669 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||||||||| || || || || || | Sbjct 2352 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTGGAAGCTTC 2293 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 2292 TGATACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 2233 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||||||||| ||||| || || |||| ||||| ||| | ||||| || Sbjct 2232 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACACTATCTGACTACAA 2173 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || |||||||| ||| | || || || | || || | |||||| Sbjct 2172 TATTCAGAAGGAATCTACTTTGCACCTGGTACTACGGCTGAGAGGTGGA 2124 Score = 152 bits (168), Expect = 6e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || || || ||||| ||||| || | || || || | Sbjct 1440 AATGCAAATTTTTGTAAAAACACTGACAGGCAAAACTATCACATTGGAAGTGGAAGCTTC 1381 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | ||||| ||||||||||||||||| || |||||||||||||| Sbjct 1380 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCA 1321 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||| || || || || | || |||| || || || | || ||||| Sbjct 1320 ACAGAGGCTGATTTTCGCCGGCAAACAGTTAGAAGATGGACGCACTCTGTCTGATTATAA 1261 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||||| ||| | || |||| |||||||| | |||||| Sbjct 1260 TATTCAAAAGGAATCTACTTTGCACTTAGTTTTGCGTCTAAGGGGTGGA 1212 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || ||||| ||||||||| | || || || | | Sbjct 1667 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCTTCT 1608 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || |||||||| || || || |||||||| ||||| Sbjct 1607 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAA 1548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || |||||||| || || ||||| || |||| || || || ||||||||||| Sbjct 1547 CAAAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTATAAT 1488 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| ||| | || |||| |||||||| | |||||| Sbjct 1487 ATACAAAAAGAATCTACTTTGCACTTAGTGTTGCGTCTAAGGGGTGGA 1440 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || ||||| || ||||| ||||| || | || || || | Sbjct 984 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 925 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | ||||| |||||||||||||| || || ||||| |||||||| Sbjct 924 TGATACAATAGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 865 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | |||||||| ||||||||||| || |||| || || || | || || || Sbjct 864 ACAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGACGAACATTATCTGATTACAA 805 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | || || ||||| ||||| || || || Sbjct 804 TATTCAGAAAGAATCTACTCTCCACCTTGT 775 >seq57945 Length=292 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||| |||||||| || |||||||| || || || | |||||||| || Sbjct 33 AAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAACAAAGACTAATTTTCGCC 92 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||| || |||| || || || ||||||||||| | || |||||||| ||| Sbjct 93 GGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAATATTCAGAAGGAATCGACT 152 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || | || ||||||||| | |||||| Sbjct 153 TTGCACTTGGTGTTGCGTCTTAGGGGTGGA 182 >seq228749 Length=622 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || || || || || ||||| || | || || |||| ||| | ||| | | || || Sbjct 426 ACAATAGTGAATCTGGCTCAAAATTACGTGGGGTCAAACAACATTAACCTGTTGGAACCC 367 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||||| || |||| ||||| |||||||||||| |||||||||| Sbjct 366 CGTGGTCAGTTTGGTACCCGCCTGTCCGGGGGCAAAGATGCTGCGAGCCCCCGTTACATT 307 Query 32245 TTCACCC 32251 ||||||| Sbjct 306 TTCACCC 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568482932998640